Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs (Q30002374)

Detecting protein function and protein-protein interactions from genome sequences

21 January 2018

1 reference

Conservation of gene order: a fingerprint of proteins that physically interact

21 January 2018

1 reference

The use of gene clusters to infer functional coupling

21 January 2018

1 reference

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 January 2018

1 reference

Localizing proteins in the cell from their phylogenetic profiles.

21 January 2018

1 reference

SNAPping up functionally related genes based on context information: a colinearity-free approach.

21 January 2018

1 reference

Predictome: a database of putative functional links between proteins

21 January 2018

1 reference

Identification of functional links between genes using phylogenetic profiles.

21 January 2018

1 reference

The ERGO genome analysis and discovery system

21 January 2018

1 reference

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages

21 January 2018

1 reference

STRING: a database of predicted functional associations between proteins

21 January 2018

1 reference

Computational methods of analysis of protein-protein interactions

21 January 2018

1 reference

Classification schemes for protein structure and function.

21 January 2018

1 reference

Computational methods for the prediction of protein interactions

21 January 2018

1 reference

Interrogating protein interaction networks through structural biology

21 January 2018

1 reference

A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

21 January 2018

1 reference

Functional genomics and proteomics: charting a multidimensional map of the yeast cell

21 January 2018

1 reference

21 January 2018

1 reference

A map of the interactome network of the metazoan C. elegans

21 January 2018

1 reference

Protein interaction networks from yeast to human

21 January 2018

1 reference

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

21 January 2018

1 reference

The Pfam protein families database

21 January 2018

1 reference

SMART 4.0: towards genomic data integration

21 January 2018

1 reference

The COG database: an updated version includes eukaryotes

21 January 2018

1 reference

Systematic discovery of analogous enzymes in thiamin biosynthesis

21 January 2018

1 reference

Operons in Escherichia coli: genomic analyses and predictions

21 January 2018

1 reference

Transcriptional coupling between the divergent promoters of a prototypic LysR-type regulatory system, the ilvYC operon of Escherichia coli

21 January 2018

1 reference

Bidirectional gene organization: a common architectural feature of the human genome.

21 January 2018

1 reference

The Escherichia coli cAMP receptor protein bound at a single target can activate transcription initiation at divergent promoters: a systematic study that exploits new promoter probe plasmids

21 January 2018

1 reference

A gene-coexpression network for global discovery of conserved genetic modules

21 January 2018

1 reference

Predicting gene function by conserved co-expression

21 January 2018

1 reference

Gene and context: integrative approaches to genome analysis

21 January 2018

1 reference

The Stanford Microarray Database: data access and quality assessment tools

21 January 2018

1 reference

Transitive functional annotation by shortest-path analysis of gene expression data

21 January 2018

1 reference

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

21 January 2018

1 reference

PRODORIC: prokaryotic database of gene regulation.

21 January 2018

1 reference

Evolution of transcription factors and the gene regulatory network in Escherichia coli

21 January 2018

1 reference

The KEGG databases at GenomeNet

21 January 2018

1 reference

Genome evolution reveals biochemical networks and functional modules

21 January 2018

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

Reconstruction of the proto-mitochondrial metabolism

21 January 2018

1 reference

Global analysis of protein localization in budding yeast

21 January 2018

1 reference

Transcriptional regulatory networks in Saccharomyces cerevisiae

21 January 2018

1 reference

The economics of ribosome biosynthesis in yeast

21 January 2018

1 reference

Genome phylogeny based on gene content

21 January 2018

1 reference

The origin and evolution of model organisms

21 January 2018

1 reference

Determining divergence times with a protein clock: update and reevaluation

21 January 2018

1 reference

Determining divergence times of the major kingdoms of living organisms with a protein clock

21 January 2018

1 reference

A new non-linear normalization method for reducing variability in DNA microarray experiments

21 January 2018

1 reference

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

Multiple sequence alignment with the Clustal series of programs

21 January 2018

1 reference

A genomic perspective on protein families

21 January 2018

1 reference

Measuring genome evolution

21 January 2018

1 reference

Computational genetics: finding protein function by nonhomology methods.

21 January 2018

1 reference

Who's your neighbor? New computational approaches for functional genomics

21 January 2018

1 reference

Missing genes in metabolic pathways: a comparative genomics approach

21 January 2018

1 reference

Function prediction and protein networks

21 January 2018

1 reference

21 January 2018

1 reference

Membrane sequestration of the signal transduction protein GlnK by the ammonium transporter AmtB.

21 January 2018

1 reference

Identification of a DNA nonhomologous end-joining complex in bacteria

21 January 2018

1 reference

Archaeal shikimate kinase, a new member of the GHMP-kinase family

21 January 2018

1 reference

The phylogenetic distribution of frataxin indicates a role in iron-sulfur cluster protein assembly

21 January 2018

1 reference

The yeast frataxin homolog Yfh1p plays a specific role in the maturation of cellular Fe/S proteins

21 January 2018

1 reference

An alternative flavin-dependent mechanism for thymidylate synthesis

21 January 2018

1 reference

Genetic regulatory mechanisms in the synthesis of proteins

21 January 2018

2 references

21 January 2018

7 January 2021

Co-expression pattern from DNA microarray experiments as a tool for operon prediction

1 reference

Genome-wide expression analysis of the responses to nitrogen deprivation in the heterocyst-forming cyanobacterium Anabaena sp. strain PCC 7120.

21 January 2018

1 reference

DNA topology-mediated control of global gene expression in Escherichia coli

21 January 2018

1 reference

Regulation of gene expression by histone-like proteins in bacteria.

21 January 2018

1 reference

Comparative Genome Analysis: Exploiting the Context of Genes to Infer Evolution and Predict Function

21 January 2018

1 reference

SHOT: a web server for the construction of genome phylogenies

21 January 2018

1 reference

[The operon after 25 years]

21 January 2018

1 reference

7 January 2021

Systematic screen for human disease genes in yeast

1 reference

7 January 2021

1 reference

7 January 2021

The effect of gene concentration and relative gene dosage on gene output in Escherichia coli

1 reference

7 January 2021