Computational methods of analysis of protein-protein interactions (Q35165246)

6 August 2017

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title

Computational methods of analysis of protein-protein interactions (English)

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6 August 2017

computational biology

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protein-protein interaction

inferred from title

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1

Lukasz Salwinski

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6 August 2017

David Eisenberg

2

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6 August 2017

1 June 2003

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Current Opinion in Structural Biology

6 August 2017

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6 August 2017

13

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6 August 2017

377-382

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6 August 2017

3

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Bridging structural biology and genomics: assessing protein interaction data with known complexes

6 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Comparative assessment of large-scale data sets of protein-protein interactions

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Is there a bias in proteome research?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Protein interactions: two methods for assessment of the reliability of high throughput observations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Protein interaction verification and functional annotation by integrated analysis of genome-scale data.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Relating whole-genome expression data with protein-protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Hierarchical organization of modularity in metabolic networks

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Lethality and centrality in protein networks

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Emergence of Scaling in Random Networks

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

The large-scale organization of metabolic networks

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Specificity and stability in topology of protein networks

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Error and attack tolerance of complex networks

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Asymmetric functional divergence of duplicate genes in yeast

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Protein function in the post-genomic era.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Protein-protein interaction map inference using interacting domain profile pairs.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Inferring domain-domain interactions from protein-protein interactions

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Transitive functional annotation by shortest-path analysis of gene expression data

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Transcriptional regulatory networks in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

The identification of functional modules from the genomic association of genes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Network motifs in the transcriptional regulation network of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Network motifs: simple building blocks of complex networks

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

From molecular to modular cell biology

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Network dynamics and cell physiology

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

A comprehensive two-hybrid analysis to explore the yeast protein interactome

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Combined functional genomic maps of the C. elegans DNA damage response

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Functional organization of the yeast proteome by systematic analysis of protein complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Global analysis of protein activities using proteome chips

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Systematic genetic analysis with ordered arrays of yeast deletion mutants

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

BIND--The Biomolecular Interaction Network Database

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

MINT: a Molecular INTeraction database

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

MIPS: a database for genomes and protein sequences

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Describing biological protein interactions in terms of protein states and state transitions: the LiveDIP database

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Predictome: a database of putative functional links between proteins

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

STRING: a database of predicted functional associations between proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Conservation of gene order: a fingerprint of proteins that physically interact

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

The use of gene clusters to infer functional coupling

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Detecting protein function and protein-protein interactions from genome sequences

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

Prediction, assessment and validation of protein interaction maps in bacteria

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https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

In silico two-hybrid system for the selection of physically interacting protein pairs.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

The Use of Phylogenetic Profiles for Gene Predictions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

A tree kernel to analyse phylogenetic profiles.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2803%2900070-8

7 January 2021

10.1016/S0959-440X(03)00070-8

Identifiers

DOI

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6 August 2017

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PubMed ID

12831890