An extensive network of coupling among gene expression machines (Q29547273)

Europe PubMed Central

title

An extensive network of coupling among gene expression machines (English)

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23 April 2017

author name string

Maniatis T

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1

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23 April 2017

Reed R

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2

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=11932736

23 April 2017

language of work or name

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23 April 2017

publication date

4 April 2002

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23 April 2017

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23 April 2017

volume

416

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page(s)

499-506

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issue

6880

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Coupling RNA polymerase II transcription with pre-mRNA processing

23 April 2017

cites work

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7 January 2021

Connecting transcription to messenger RNA processing

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7 January 2021

The ends of the affair: capping and polyadenylation.

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7 January 2021

Coordination between transcription and pre-mRNA processing

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7 January 2021

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

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7 January 2021

Opposing effects of Ctk1 kinase and Fcp1 phosphatase at Ser 2 of the RNA polymerase II C-terminal domain

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7 January 2021

Characterization of the Residues Phosphorylatedin Vitroby Different C-terminal Domain Kinases

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7 January 2021

P-TEFb, a cyclin-dependent kinase controlling elongation by RNA polymerase II

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7 January 2021

5'-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II

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7 January 2021

mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain

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7 January 2021

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

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7 January 2021

Capping, splicing, and 3' processing are independently stimulated by RNA polymerase II: different functions for different segments of the CTD

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7 January 2021

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

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7 January 2021

Distinct roles for CTD Ser-2 and Ser-5 phosphorylation in the recruitment and allosteric activation of mammalian mRNA capping enzyme

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7 January 2021

Dynamic association of capping enzymes with transcribing RNA polymerase II

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7 January 2021

Allosteric interactions between capping enzyme subunits and the RNA polymerase II carboxy-terminal domain

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7 January 2021

Interaction between P-TEFb and the C-terminal domain of RNA polymerase II activates transcriptional elongation from sites upstream or downstream of target genes

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7 January 2021

Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro

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7 January 2021

Positive transcription elongation factor B phosphorylates hSPT5 and RNA polymerase II carboxyl-terminal domain independently of cyclin-dependent kinase-activating kinase.

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7 January 2021

Transcription elongation factor hSPT5 stimulates mRNA capping

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7 January 2021

Stimulatory effect of splicing factors on transcriptional elongation

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7 January 2021

NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase II.

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7 January 2021

Tat-SF1 protein associates with RAP30 and human SPT5 proteins

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7 January 2021

CUS2, a yeast homolog of human Tat-SF1, rescues function of misfolded U2 through an unusual RNA recognition motif

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A handful of intron-containing genes produces the lion's share of yeast mRNA.

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A human RNA polymerase II-containing complex associated with factors necessary for spliceosome assembly

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A CTD function linking transcription to splicing

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The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.

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7 January 2021

Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals

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7 January 2021

Exon recognition in vertebrate splicing

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7 January 2021

Co-transcriptional splicing of pre-messenger RNAs: considerations for the mechanism of alternative splicing

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7 January 2021

A human papillomavirus E2 transcriptional activator. The interactions with cellular splicing factors and potential function in pre-mRNA processing

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7 January 2021

A novel transcriptional coactivator, p52, functionally interacts with the essential splicing factor ASF/SF2

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7 January 2021

Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC-1

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7 January 2021

Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo

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7 January 2021

Sorting out the complexity of SR protein functions

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7 January 2021

SR proteins are 'locators' of the RNA splicing machinery

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7 January 2021

A cold-inducible coactivator of nuclear receptors linked to adaptive thermogenesis

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7 January 2021

Functional association between promoter structure and transcript alternative splicing.

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7 January 2021

Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer

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7 January 2021

Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing

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7 January 2021

Effects of RNA secondary structure on alternative splicing of Pre-mRNA: Is folding limited to a region behind the transcribing RNA polymerase?

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Co-transcriptional commitment to alternative splice site selection.

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7 January 2021

A nuclear cap-binding complex facilitates association of U1 snRNP with the cap-proximal 5' splice site.

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7 January 2021

The yeast splicing factor Mud13p is a commitment complex component and corresponds to CBP20, the small subunit of the nuclear cap-binding complex

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7 January 2021

SRm160 splicing coactivator promotes transcript 3'-end cleavage

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7 January 2021

Mechanisms of fidelity in pre-mRNA splicing

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7 January 2021

How RNA polymerase II terminates transcription in higher eukaryotes

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7 January 2021

Coupling termination of transcription to messenger RNA maturation in yeast.

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Role of RNA polymerase II carboxy-terminal domain in coordinating transcription with RNA processing

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Multiple transcript cleavage precedes polymerase release in termination by RNA polymerase II

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EM visualization of transcription by RNA polymerase II: downstream termination requires a poly(A) signal but not transcript cleavage.

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Mechanism of poly(A) signal transduction to RNA polymerase II in vitro

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Transcriptional termination factors for RNA polymerase II in yeast

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Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination

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Inefficient processing impairs release of RNA from the site of transcription

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A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription

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7 January 2021

A role for Cajal bodies in assembly of the nuclear transcription machinery

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Functional architecture in the cell nucleus

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7 January 2021

Newly assembled snRNPs associate with coiled bodies before speckles, suggesting a nuclear snRNP maturation pathway

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The dynamics of a pre-mRNA splicing factor in living cells

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7 January 2021

Serine phosphorylation of SR proteins is required for their recruitment to sites of transcription in vivo

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7 January 2021

RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo

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High mobility of proteins in the mammalian cell nucleus

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The organization of replication and transcription

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In situ transcription and splicing in the Balbiani ring 3 gene

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Splicing is required for rapid and efficient mRNA export in metazoans

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7 January 2021

The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans

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7 January 2021

The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions

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7 January 2021

Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly

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7 January 2021

Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p

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7 January 2021

The DExH/D box protein HEL/UAP56 is essential for mRNA nuclear export in Drosophila

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7 January 2021

The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay

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7 January 2021

Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm

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7 January 2021

Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1

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The Y14 protein communicates to the cytoplasm the position of exon-exon junctions

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7 January 2021

Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex

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7 January 2021

The C-terminal domain of TAP interacts with the nuclear pore complex and promotes export of specific CTE-bearing RNA substrates

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7 January 2021

Mex67p, a novel factor for nuclear mRNA export, binds to both poly(A)+ RNA and nuclear pores

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7 January 2021

The DECD box putative ATPase Sub2p is an early mRNA export factor

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7 January 2021

A new view of mRNA export: separating the wheat from the chaff

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Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA

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Quality control of mRNA 3'-end processing is linked to the nuclear exosome

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Messenger RNAs are recruited for nuclear export during transcription

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7 January 2021

Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation

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7 January 2021

Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast

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7 January 2021

The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay

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7 January 2021

Quality control of mRNA function

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7 January 2021

Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)

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7 January 2021

Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon

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7 January 2021

A perfect message: RNA surveillance and nonsense-mediated decay

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7 January 2021

Precursor RNAs harboring nonsense codons accumulate near the site of transcription.

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7 January 2021

Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20

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7 January 2021

Should we kill the messenger? The role of the surveillance complex in translation termination and mRNA turnover

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7 January 2021

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=11932736

Identifiers

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23 April 2017

Consolidated OpenCitations Corpus – April 2017

Dimensions Publication ID

1379472

1030329468

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1379472

1 reference

Consolidated OpenCitations Corpus – April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=11932736

2 references

23 April 2017

Consolidated OpenCitations Corpus – April 2017