Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements (Q28818088)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27794040%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Nikos C. Kyrpides

10

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3 June 2020

Tbk Reddy

11

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3 June 2020

author name string

Dimitri Stamatis

2

1 reference

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3 June 2020

Jon Bertsch

3

1 reference

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3 June 2020

Galina Ovchinnikova

4

1 reference

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3 June 2020

Olena Verezemska

5

1 reference

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3 June 2020

Michelle Isbandi

6

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3 June 2020

Alex D Thomas

7

1 reference

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3 June 2020

Rida Ali

8

1 reference

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3 June 2020

Kaushal Sharma

9

1 reference

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3 June 2020

language of work or name

English

0 references

publication date

4 January 2017

0 references

published in

Nucleic Acids Research

1 reference

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3 June 2020

volume

45

1 reference

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3 June 2020

issue

D1

1 reference

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3 June 2020

page(s)

D446-D456

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A new view of the tree of life

3 June 2020

cites work

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Uncovering Earth’s virome

16 March 2017

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Crowdsourcing and curation: perspectives from biology and natural language processing

16 March 2017

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Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

16 March 2017

1 reference

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EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data

16 March 2017

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Genomic standards consortium projects

16 March 2017

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Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

16 March 2017

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Insights into the phylogeny and coding potential of microbial dark matter

16 March 2017

1 reference

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Text mining for the biocuration workflow

16 March 2017

1 reference

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The NCBI Taxonomy database

16 March 2017

1 reference

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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

16 March 2017

1 reference

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Genomic sequencing of single microbial cells from environmental samples

16 March 2017

1 reference

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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide

16 March 2017

1 reference

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EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation

16 March 2017

1 reference

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A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

6 April 2017

1 reference

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SAR11 bacteria linked to ocean anoxia and nitrogen loss.

7 April 2017

1 reference

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BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences

3 June 2018

1 reference

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Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

3 June 2018

1 reference

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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

3 June 2018

1 reference

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Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Big Data: Astronomical or Genomical?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

ProDeGe: a computational protocol for fully automated decontamination of genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Metazen - metadata capture for metagenomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project

3 June 2018

1 reference

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Impact of single-cell genomics and metagenomics on the emerging view of extremophile "microbial dark matter".

3 June 2018

1 reference

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Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics

3 June 2018

1 reference

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StrainInfo introduces electronic passports for microorganisms.

3 June 2018

1 reference

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MycoCosm portal: gearing up for 1000 fungal genomes.

3 June 2018

1 reference

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PATRIC, the bacterial bioinformatics database and analysis resource

3 June 2018

1 reference

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IMG 4 version of the integrated microbial genomes comparative analysis system

3 June 2018

1 reference

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IMG/M 4 version of the integrated metagenome comparative analysis system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

The state of standards in genomic sciences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

The Sequence Read Archive: explosive growth of sequencing data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

A catalog of reference genomes from the human microbiome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Genomes OnLine Database (GOLD): a monitor of genome projects world-wide

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210664

Genomic Standards Consortium Projects

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW992

Database resources of the National Center for Biotechnology Information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW992

International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2008 Revision)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW992

21 January 2018

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https://api.crossref.org/works/10.1093%2FNAR%2FGKW992

BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW992

The State of Standards in Genomic Sciences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW992

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW992

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27794040%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/MukherjeeSBOVIT17

3 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27794040%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference