Cofactor requirement of HpyAV restriction endonuclease (Q28749088)

2

0 references

Lauren Higgins

3

0 references

Diana O'loane

4

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Shuang-Yong Xu

Creative Commons Attribution 4.0 International

5

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language of work or name

English

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publication date

5 February 2010

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published in

PLOS One

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volume

5

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issue

2

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page(s)

e9071

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copyright license

start time

5 February 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The crystal structure of the nuclease domain of colicin E7 suggests a mechanism for binding to double-stranded DNA by the H-N-H endonucleases

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The role of metals in catalysis by the restriction endonuclease BamHI

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Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site

20 June 2018

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An equivalent metal ion in one- and two-metal-ion catalysis

20 June 2018

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MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection

20 June 2018

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Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses

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Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori

20 June 2018

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Altered target site specificity variants of the I-PpoI His-Cys box homing endonuclease

20 June 2018

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Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily

20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

H pylori iceA alleles are disease-specific virulence factors

20 June 2018

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Identification of a single HNH active site in type IIS restriction endonuclease Eco31I.

20 June 2018

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R.KpnI, an HNH superfamily REase, exhibits differential discrimination at non-canonical sequences in the presence of Ca2+ and Mg2+.

20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Molecular mechanisms of pathogenicity of Mycoplasma mycoides subsp. mycoides SC.

20 June 2018

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DNA adenine methylation and bacterial pathogenesis

20 June 2018

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Homing endonuclease structure and function

20 June 2018

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Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis

20 June 2018

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MnlI--The member of H-N-H subtype of Type IIS restriction endonucleases

20 June 2018

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20 June 2018

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Cloning of CviPII nicking and modification system from chlorella virus NYs-1 and application of Nt.CviPII in random DNA amplification

20 June 2018

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Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily

20 June 2018

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Catalytic mechanisms of restriction and homing endonucleases

20 June 2018

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Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori

20 June 2018

1 reference

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Mutagenic scan of the H-N-H motif of colicin E9: implications for the mechanistic enzymology of colicins, homing enzymes and apoptotic endonucleases

20 June 2018

1 reference

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The molecular basis of Streptococcus equi infection and disease

20 June 2018

1 reference

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The zinc ion in the HNH motif of the endonuclease domain of colicin E7 is not required for DNA binding but is essential for DNA hydrolysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Mechanism and cleavage specificity of the H-N-H endonuclease colicin E9.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

The CcrM DNA methyltransferase of Agrobacterium tumefaciens is essential, and its activity is cell cycle regulated

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

STRAP: editor for STRuctural Alignments of Proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Comparative genomics of the restriction-modification systems in Helicobacter pylori

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Polyphyletic evolution of type II restriction enzymes revisited: two independent sources of second-hand folds revealed

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Identification of type II restriction and modification systems in Helicobacter pylori reveals their substantial diversity among strains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Type II restriction endonucleases: structural, functional and evolutionary relationships

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Identification of the Serratia endonuclease dimer: structural basis and implications for catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Analysis of the mechanism of the Serratia nuclease using site-directed mutagenesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Substrate binding and turnover by the highly specific I-PpoI endonuclease.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Growth characteristics of large- and small-colony types of Mycoplasma mycoides subsp. mycoides on 5% sheep blood agar

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Discrimination between DNA sequences by the EcoRV restriction endonuclease.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

'Star' activity and complete loss of specificity of CeqI endonuclease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Altering the specificity of restriction endonuclease: effect of replacing Mg2+with Mn2+

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

On the Divalent Metal Ion Dependence of DNA Cleavage by Restriction Endonucleases of the EcoRI Family

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Oligomeric structure diversity within the GIY-YIG nuclease family.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Tetrameric restriction enzymes: expansion to the GIY-YIG nuclease family

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Natural transformation increases the rate of adaptation in the human pathogen Helicobacter pylori.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Hin4II, a new prototype restriction endonuclease from Haemophilus influenzae RFL4: discovery, cloning and expression in Escherichia coli.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Ca(2+)-mediated site-specific DNA cleavage and suppression of promiscuous activity of KpnI restriction endonuclease

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Structure-based analysis of the metal-dependent mechanism of H-N-H endonucleases

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Diversity of restriction-modification gene homologues in Helicobacter pylori.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Characteristics of Helicobacter pylori natural transformation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Enzymological characterization of the nuclease domain from the bacterial toxin colicin E9 from Escherichia coli.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

Divalent cation modulation of the ribonuclease functions of human immunodeficiency virus reverse transcriptase

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

EcoRV restriction endonuclease: communication between catalytic metal ions and DNA recognition

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2816704

2.1 A structure of Serratia endonuclease suggests a mechanism for binding to double-stranded DNA

27 November 2018

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12 December 2020

Two-domain structure of the td intron-encoded endonuclease I-TevI correlates with the two-domain configuration of the homing site

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12 December 2020

Domain organization and metal ion requirement of the Type IIS restriction endonuclease MnlI

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12 December 2020

Domain organization and functional analysis of type IIS restriction endonuclease Eco31I

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Detection of Brachyspira hyodysenteriae, Lawsonia intracellularis and Brachyspira pilosicoli in feral pigs

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Helicobacter pylori and gastric carcinogenesis

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12 December 2020

Chemical Mechanism of DNA Cleavage by the Homing Endonuclease I-PpoI†

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Genetic system for reversible integration of DNA constructs and lacZ gene fusions into the Escherichia coli chromosome

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12 December 2020

Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes

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12 December 2020

Mechanisms of metal ion action in Tn10 transposition

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12 December 2020