Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3'->5' helicase partner of the nuclear exosome (Q27937624)

GOA release 2020-03-11

author name string

Jade Bernstein

1

0 references

Dimeka N Patterson

2

0 references

Gerald M Wilson

3

0 references

Eric A Toth

Journal of Biological Chemistry

4

0 references

language of work or name

English

0 references

publication date

22 February 2008

0 references

published in

1 reference

1 December 2016

283

0 references

page(s)

4930-42

0 references

issue

8

0 references

cites work

The yin and yang of the exosome

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

A single subunit, Dis3, is essentially responsible for yeast exosome core activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Reconstitution, activities, and structure of the eukaryotic RNA exosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

A nuclear 3'-5' exonuclease involved in mRNA degradation interacts with Poly(A) polymerase and the hnRNA protein Npl3p

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

A new yeast poly(A) polymerase complex involved in RNA quality control

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

The Escherichia coli pcnB gene promotes adenylylation of antisense RNAI of ColE1-type plasmids in vivo and degradation of RNAI decay intermediates

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Adenylation and exosome-mediated degradation of cotranscriptionally cleaved pre-messenger RNA in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Quality control of mRNA 3'-end processing is linked to the nuclear exosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Identification of a regulated pathway for nuclear pre-mRNA turnover.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Processing of 3'-extended read-through transcripts by the exosome can generate functional mRNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Comprehensive mutational analysis of yeast DEXD/H box RNA helicases involved in large ribosomal subunit biogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Active site comparisons highlight structural similarities between myosin and other P-loop proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

An improved assay for nanomole amounts of inorganic phosphate

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Assembly of AUF1 oligomers on U-rich RNA targets by sequential dimer association

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Folding of A+U-rich RNA elements modulates AUF1 binding. Potential roles in regulation of mRNA turnover

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

1 Equilibrium and kinetic inhibition assays based upon fluorescence polarization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Fluorescence polarization analysis of protein-DNA and protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Thermodynamics and kinetics of Hsp70 association with A + U-rich mRNA-destabilizing sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Comparative characterization of two DEAD-box RNA helicases in superfamily II: human translation-initiation factor 4A and hepatitis C virus non-structural protein 3 (NS3) helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Eukaryotic initiation factor 4A is the component that interacts with ATP in protein chain initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Characterization of the NTPase, RNA-binding, and RNA helicase activities of the DEAH-box splicing factor Prp22.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

The exosome subunit Rrp44 plays a direct role in RNA substrate recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Trf4 and Trf5 proteins of Saccharomyces cerevisiae exhibit poly(A) RNA polymerase activity but no DNA polymerase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Yeast Trf5p is a nuclear poly(A) polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

A steady-state and pre-steady-state kinetic analysis of the NTPase activity associated with the hepatitis C virus NS3 helicase domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Structural basis for DNA duplex separation by a superfamily-2 helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Crystal structure of the ATPase domain of translation initiation factor 4A from Saccharomyces cerevisiae--the prototype of the DEAD box protein family

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Crystallographic structure of the amino terminal domain of yeast initiation factor 4A, a representative DEAD-box RNA helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Crystal structure of the human ATP-dependent splicing and export factor UAP56.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Crystal structure of UAP56, a DExD/H-box protein involved in pre-mRNA splicing and mRNA export

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Polyadenylation promotes degradation of 3'-structured RNA by the Escherichia coli mRNA degradosome in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200

The DExH protein NPH-II is a processive and directional motor for unwinding RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M706677200