Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory (Q27932981)

8

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author name string

Agustina D'Urso

1

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Yoh-Hei Takahashi

2

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Bin Xiong

3

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Jessica Marone

4

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Robert Coukos

5

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Carlo Randise-Hinchliff

6

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Ji-Ping Wang

7

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Jason H Brickner

Subunit architecture and functional modular rearrangements of the transcriptional mediator complex

9

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language of work or name

English

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publication date

23 June 2016

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1 reference

1 December 2016

5

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cites work

1 reference

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Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery

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Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory

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DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery

20 March 2017

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Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex

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Dimethylation of H3K4 by Set1 recruits the Set3 histone deacetylase complex to 5' transcribed regions

20 March 2017

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High-resolution DNA-binding specificity analysis of yeast transcription factors

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Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS

20 March 2017

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Identification and characterization of the human Set1B histone H3-Lys4 methyltransferase complex

20 March 2017

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Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets

20 March 2017

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Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription

20 March 2017

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Gene recruitment of the activated INO1 locus to the nuclear membrane

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Menin associates with a trithorax family histone methyltransferase complex and with the hoxc8 locus

20 March 2017

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Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter

20 March 2017

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Srb10/Cdk8 regulates yeast filamentous growth by phosphorylating the transcription factor Ste12.

20 March 2017

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COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression

20 March 2017

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The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4

20 March 2017

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The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program

20 March 2017

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COMPASS: a complex of proteins associated with a trithorax-related SET domain protein

20 March 2017

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Genomic expression programs in the response of yeast cells to environmental changes

20 March 2017

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The three yeast A kinases have specific signaling functions in pseudohyphal growth

20 March 2017

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Srb/mediator proteins interact functionally and physically with transcriptional repressor Sfl1.

20 March 2017

1 reference

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DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs

20 March 2017

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The genetic landscape of a cell

20 March 2017

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The economics of ribosome biosynthesis in yeast

20 March 2017

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TFIIH is negatively regulated by cdk8-containing mediator complexes

20 March 2017

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NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation

20 March 2017

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The two faces of Cdk8, a positive/negative regulator of transcription

20 March 2017

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CDK8 kinase phosphorylates transcription factor STAT1 to selectively regulate the interferon response

20 March 2017

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PARP-1 determines specificity in a retinoid signaling pathway via direct modulation of mediator

20 March 2017

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Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae

20 March 2017

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Identification of an 11-kDa FKBP12-rapamycin-binding domain within the 289-kDa FKBP12-rapamycin-associated protein and characterization of a critical serine residue

20 March 2017

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Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains

20 March 2017

1 reference

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Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

20 March 2017

1 reference

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Active genes are tri-methylated at K4 of histone H3

7 April 2017

1 reference

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Regulation of MLL1 H3K4 methyltransferase activity by its core components

7 April 2017

1 reference

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Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression

7 April 2017

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Genome-wide map of nucleosome acetylation and methylation in yeast

7 April 2017

1 reference

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Molecular genetics of the RNA polymerase II general transcriptional machinery

7 April 2017

1 reference

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Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase

7 April 2017

1 reference

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Strategies to regulate transcription factor-mediated gene positioning and interchromosomal clustering at the nuclear periphery

7 April 2017

1 reference

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Inducible chromatin priming is associated with the establishment of immunological memory in T cells.

29 September 2017

1 reference

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RNA polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA polymerase II.

29 September 2017

1 reference

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A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory

29 September 2017

1 reference

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The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression

29 September 2017

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PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II

29 September 2017

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Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling

29 September 2017

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Approaches to studying subnuclear organization and gene-nuclear pore interactions

29 September 2017

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Mechanisms of epigenetic memory

29 September 2017

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TFIIH phosphorylation of the Pol II CTD stimulates mediator dissociation from the preinitiation complex and promoter escape.

29 September 2017

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Different gene-specific mechanisms determine the 'revised-response' memory transcription patterns of a subset of A. thaliana dehydration stress responding genes

29 September 2017

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Kin28 regulates the transient association of Mediator with core promoters

29 September 2017

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Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns.

29 September 2017

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Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast

29 September 2017

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Pol II docking and pausing at growth and stress genes in C. elegans

29 September 2017

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Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

29 September 2017

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The MLL3/MLL4 branches of the COMPASS family function as major histone H3K4 monomethylases at enhancers

29 September 2017

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Control of transcriptional elongation

29 September 2017

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The Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells

29 September 2017

1 reference

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Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome.

29 September 2017

1 reference

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Global regulation of promoter melting in naive lymphocytes

29 September 2017

1 reference

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Transcriptional elongation checkpoint control in development and disease

29 September 2017

1 reference

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A conserved role for human Nup98 in altering chromatin structure and promoting epigenetic transcriptional memory

29 September 2017

1 reference

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Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3'-end antisense transcription

29 September 2017

1 reference

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Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics.

29 September 2017

1 reference

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The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis

29 September 2017

1 reference

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Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

29 September 2017

1 reference

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The COMPASS family of H3K4 methylases in Drosophila

29 September 2017

1 reference

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Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation

29 September 2017

1 reference

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Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription.

29 September 2017

1 reference

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CDK8: a positive regulator of transcription

29 September 2017

1 reference

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Mediator and post-recruitment regulation of RNA polymerase II

29 September 2017

1 reference

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Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory

29 September 2017

1 reference

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Gamma interferon-dependent transcriptional memory via relocalization of a gene locus to PML nuclear bodies

29 September 2017

1 reference

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Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II.

29 September 2017

1 reference

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Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1.

29 September 2017

1 reference

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Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants

29 September 2017

1 reference

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Stress-activated genomic expression changes serve a preparative role for impending stress in yeast

29 September 2017

1 reference

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Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation

29 September 2017

1 reference

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H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state

29 September 2017

1 reference

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Ctk complex-mediated regulation of histone methylation by COMPASS.

29 September 2017

1 reference

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The multiple faces of Set1.

29 September 2017

1 reference

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Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes

29 September 2017

1 reference

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Transcriptional elongation by RNA polymerase II and histone methylation

29 September 2017

1 reference

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In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition

29 September 2017

1 reference

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RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells

29 September 2017

1 reference

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Regulation of transcription by the MLL2 complex and MLL complex-associated AKAP95.

29 September 2017

1 reference

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P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo

2 June 2018

1 reference

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Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription

2 June 2018

1 reference

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A conserved chromatin architecture marks and maintains the restricted germ cell lineage in worms and flies

2 June 2018

1 reference

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GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion

2 June 2018

1 reference

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The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.

2 June 2018

1 reference

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The block to transcription elongation is promoter dependent in normal and Burkitt's lymphoma c-myc alleles

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4951200

INO1 transcriptional memory leads to DNA zip code-dependent interchromosomal clustering

2 June 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

The anchor-away technique: rapid, conditional establishment of yeast mutant phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

Using chromatin immunoprecipitation to map cotranscriptional mRNA processing in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

Requirement of Hos2 histone deacetylase for gene activity in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

A yeast catabolic enzyme controls transcriptional memory

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.16691

Quantitative localization of chromosomal loci by immunofluorescence

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27336723

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins or yeast heat-shock transcription factor

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27336723