Structural and Dynamic Features of the MutT Protein in the Recognition of Nucleotides with the Mutagenic 8-Oxoguanine Base (Q27658008)

2

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Seiju Kitagawa

3

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Nanase Abe

4

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Junichi Yamada

5

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Tetsuya Ishino

6

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Hiroaki Nakano

7

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Teruhisa Tsuzuki

8

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Takefumi Doi

9

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Yuji Kobayashi

10

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Satoshi Fujii

11

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Mutsuo Sekiguchi

12

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Yuriko Yamagata

Journal of Biological Chemistry

13

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language of work or name

English

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publication date

1 January 2010

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published in

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volume

285

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issue

1

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page(s)

444-52

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cites work

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DNA lesion recognition by the bacterial repair enzyme MutM

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The crystal structure and mutational analysis of human NUDT9

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Solution structure and NH exchange studies of the MutT pyrophosphohydrolase complexed with Mg(2+) and 8-oxo-dGMP, a tightly bound product

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Structure and mechanism of MT-ADPRase, a nudix hydrolase from Mycobacterium tuberculosis

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Structure of a Coenzyme A Pyrophosphatase from Deinococcus radiodurans: a Member of the Nudix Family

20 March 2017

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Mechanism of the Escherichia coli ADP-ribose pyrophosphatase, a Nudix hydrolase

20 March 2017

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The crystal structure of diadenosine tetraphosphate hydrolase from Caenorhabditis elegans in free and binary complex forms

20 March 2017

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Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability

20 March 2017

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Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets

20 March 2017

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The structure of ADP-ribose pyrophosphatase reveals the structural basis for the versatility of the Nudix family

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Human MTH1 protein hydrolyzes the oxidized ribonucleotide, 2-hydroxy-ATP

20 March 2017

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Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

20 March 2017

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Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,)

20 March 2017

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The oxidized forms of dATP are substrates for the human MutT homologue, the hMTH1 protein

20 March 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

20 March 2017

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Solution structure of the MutT enzyme, a nucleoside triphosphate pyrophosphohydrolase

20 March 2017

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Searching protein structure databases with DaliLite v.3

20 March 2017

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The CCP4 suite: programs for protein crystallography

20 March 2017

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Automated MAD and MIR structure solution

20 March 2017

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

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Preparation of selenomethionyl proteins for phase determination

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Solvent content of protein crystals

20 March 2017

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Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

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Crystal structure and functional analysis of Dcp2p from Schizosaccharomyces pombe

20 March 2017

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Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates

20 March 2017

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Crystal structures of human NUDT5 reveal insights into the structural basis of the substrate specificity

20 March 2017

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MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis

20 March 2017

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The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes

20 March 2017

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Crystallization and preliminary X-ray analysis of human MTH1 complexed with two oxidized nucleotides, 8-oxo-dGMP and 2-oxo-dATP.

20 March 2017

1 reference

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Multiple enzyme activities of Escherichia coli MutT protein for sanitization of DNA and RNA precursor pools

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Structures and mechanisms of Nudix hydrolases.

29 September 2017

1 reference

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Gene ytkD of Bacillus subtilis encodes an atypical nucleoside triphosphatase member of the Nudix hydrolase superfamily

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Interactions of the products, 8-oxo-dGMP, dGMP, and pyrophosphate with the MutT nucleoside triphosphate pyrophosphohydrolase.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Functional significance of conserved residues in the phosphohydrolase module of Escherichia coli MutT protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Mutational, kinetic, and NMR studies of the roles of conserved glutamate residues and of lysine-39 in the mechanism of the MutT pyrophosphohydrolase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Single-turnover and pre-steady-state kinetics of the reaction of the adenine glycosylase MutY with mismatch-containing DNA substrates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Dual divalent cation requirement of the MutT dGTPase. Kinetic and magnetic resonance studies of the metal and substrate complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Escherichia coli mutY gene product is required for specific A-G----C.G mismatch correction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

mutM, a second mutator locus in Escherichia coli that generates G.C----T.A transversions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

A specific role of MutT protein: to prevent dG.dA mispairing in DNA replication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

8-oxoguanine (8-hydroxyguanine) DNA glycosylase and its substrate specificity

29 September 2017

1 reference

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Characterization of the mutT nucleoside triphosphatase of Escherichia coli

29 September 2017

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Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Polynucleotides. 33. Synthesis and properties of the dinucleoside monophosphates containing adenine S-cyclonucleosides and adenosine. Factors determining the stability and handedness of the stacking conformation in a dinucleoside monophosphate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Identification of Bdellovibrio bacteriovorus HD100 Bd0714 as a Nudix dGTPase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

New substrates for old enzymes. 5-Hydroxy-2'-deoxycytidine and 5-hydroxy-2'-deoxyuridine are substrates for Escherichia coli endonuclease III and formamidopyrimidine DNA N-glycosylase, while 5-hydroxy-2'-deoxyuridine is a substrate for uracil DNA N-

2 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Substrate specificity of Fpg protein. Recognition and cleavage of oxidatively damaged DNA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2804192

Counteraction by MutT protein of transcriptional errors caused by oxidative damage.

19 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Crystallization and preliminary X-ray analysis of Escherichia coli MutT in binary and ternary complex forms

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M109.066373

AMoRe: an automated package for molecular replacement

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M109.066373

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M109.066373

A solution for the best rotation to relate two sets of vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Mutational, NMR, and NH exchange studies of the tight and selective binding of 8-oxo-dGMP by the MutT pyrophosphohydrolase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Hydrolysis of oxidized nucleotides by the Escherichia coli Orf135 protein

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Structure and mechanism of GDP-mannose glycosyl hydrolase, a Nudix enzyme that cleaves at carbon instead of phosphorus

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Structural studies of the Nudix hydrolase DR1025 from Deinococcus radiodurans and its ligand complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Crystal structures of U8 snoRNA decapping nudix hydrolase, X29, and its metal and cap complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

Structure of a Nudix protein fromPyrobaculum aerophilumreveals a dimer with two intersubunit β-sheets

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.066373

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19864691

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19864691