Histone deacetylase RPD3 YNL330C (Q27548560)

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fungal protein found in Saccharomyces cerevisiae S288c
  • RPD3
  • histone deacetylase RPD3
  • YNL330C
edit
Language Label Description Also known as
English
Histone deacetylase RPD3 YNL330C
fungal protein found in Saccharomyces cerevisiae S288c
  • RPD3
  • histone deacetylase RPD3
  • YNL330C

Statements

molecular function
histone deacetylase activity
determination method
IMP
IDA
IEA
7 references
retrieved
16 July 2018
stated in
Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3.
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
GOA
curator
UniProt
UniProt protein ID
P32561
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IEA
retrieved
16 July 2018
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IEA
retrieved
16 July 2018
stated in
A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IDA
protein binding
determination method
IPI
10 references
retrieved
9 May 2019
stated in
Raf60, a novel component of the Rpd3 histone deacetylase complex required for Rpd3 activity in Saccharomyces cerevisiae
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
Eaf5/7/3 form a functionally independent NuA4 submodule linked to RNA polymerase II-coupled nucleosome recycling
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
Identification of two CyP-40-like cyclophilins in Saccharomyces cerevisiae, one of which is required for normal growth
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
Ssn6-Tup1 interacts with class I histone deacetylases required for repression
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
Defining the budding yeast chromatin-associated interactome
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo.
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes.
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
Proteome survey reveals modularity of the yeast cell machinery
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
histone deacetylase activity
determination method
IBA
IDA
IEA
IMP
8 references
retrieved
9 May 2019
stated in
Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
GOA
curator
UniProt
UniProt protein ID
P32561
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IEA
retrieved
9 May 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IEA
retrieved
9 May 2019
stated in
A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IDA
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IBA
cell component
biological process
negative regulation of transcription by RNA polymerase II
determination method
IMP
IPI
IGI
8 references
retrieved
9 May 2019
stated in
Ssn6-Tup1 interacts with class I histone deacetylases required for repression
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IPI
retrieved
9 May 2019
stated in
H4 acetylation does not replace H3 acetylation in chromatin remodelling and transcription activation of Adr1-dependent genes.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
The Rpd3L HDAC complex is essential for the heat stress response in yeast.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
The unfolded protein response represses differentiation through the RPD3-SIN3 histone deacetylase
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Transcriptional regulation by Pho23 modulates the frequency of autophagosome formation
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
The roles of the catalytic and noncatalytic activities of Rpd3L and Rpd3S in the regulation of gene transcription in yeast
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Ssn6-Tup1 interacts with class I histone deacetylases required for repression
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IGI
positive regulation of transcription by RNA polymerase II
determination method
IMP
IGI
7 references
retrieved
16 July 2018
stated in
Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
Regulation of the HAP1 gene involves positive actions of histone deacetylases
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
The Rpd3L HDAC complex is essential for the heat stress response in yeast.
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
16 July 2018
stated in
Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IGI
retrieved
16 July 2018
stated in
Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
GOA
curator
SGD
Saccharomyces Genome Database ID
S000005274
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
determination method
IGI
positive regulation of transcription by RNA polymerase II
determination method
IBA
IGI
IMP
8 references
retrieved
9 May 2019
stated in
The Rpd3L HDAC complex is essential for the heat stress response in yeast.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Regulation of the HAP1 gene involves positive actions of histone deacetylases
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IMP
retrieved
9 May 2019
stated in
Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IGI
retrieved
9 May 2019
stated in
Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IGI
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
determination method
IBA

Identifiers

 
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