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Histone deacetylase RPD3 YNL330C (Q27548560)

From Wikidata
fungal protein found in Saccharomyces cerevisiae S288c
  • RPD3
  • histone deacetylase RPD3
  • YNL330C
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    English
    Histone deacetylase RPD3 YNL330C
    fungal protein found in Saccharomyces cerevisiae S288c
    • RPD3
    • histone deacetylase RPD3
    • YNL330C

    Statements

    molecular function
    histone deacetylase activity
    determination method or standard
    IMP
    IDA
    IEA
    7 references
    retrieved
    16 July 2018
    stated in
    Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    GOA
    curator
    UniProt
    UniProt protein ID
    P32561
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IEA
    retrieved
    16 July 2018
    stated in
    GOA
    curator
    InterPro
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IEA
    retrieved
    16 July 2018
    stated in
    A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IDA
    protein binding
    determination method or standard
    IPI
    10 references
    retrieved
    9 May 2019
    stated in
    Raf60, a novel component of the Rpd3 histone deacetylase complex required for Rpd3 activity in Saccharomyces cerevisiae
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    Eaf5/7/3 form a functionally independent NuA4 submodule linked to RNA polymerase II-coupled nucleosome recycling
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    Identification of two CyP-40-like cyclophilins in Saccharomyces cerevisiae, one of which is required for normal growth
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    Ssn6-Tup1 interacts with class I histone deacetylases required for repression
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    Defining the budding yeast chromatin‐associated interactome
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo.
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes.
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    Proteome survey reveals modularity of the yeast cell machinery
    GOA
    curator
    IntAct protein interaction database
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    histone deacetylase activity
    determination method or standard
    IBA
    IDA
    IEA
    IMP
    8 references
    retrieved
    9 May 2019
    stated in
    Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    GOA
    curator
    UniProt
    UniProt protein ID
    P32561
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IEA
    retrieved
    9 May 2019
    stated in
    GOA
    curator
    InterPro
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IEA
    retrieved
    9 May 2019
    stated in
    A conserved motif common to the histone acetyltransferase Esa1 and the histone deacetylase Rpd3.
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IDA
    retrieved
    9 May 2019
    stated in
    Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
    GOA
    curator
    GO Central
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IBA
    cell component
    biological process
    negative regulation of transcription by RNA polymerase II
    determination method or standard
    IMP
    IPI
    IGI
    8 references
    retrieved
    9 May 2019
    stated in
    Ssn6-Tup1 interacts with class I histone deacetylases required for repression
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IPI
    retrieved
    9 May 2019
    stated in
    H4 acetylation does not replace H3 acetylation in chromatin remodelling and transcription activation of Adr1-dependent genes.
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    The Rpd3L HDAC complex is essential for the heat stress response in yeast.
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    The unfolded protein response represses differentiation through the RPD3-SIN3 histone deacetylase
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Transcriptional Regulation by Pho23 Modulates the Frequency of Autophagosome Formation
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    The roles of the catalytic and noncatalytic activities of Rpd3L and Rpd3S in the regulation of gene transcription in yeast
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Ssn6-Tup1 interacts with class I histone deacetylases required for repression
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IGI
    positive regulation of transcription by RNA polymerase II
    determination method or standard
    IMP
    IGI
    7 references
    retrieved
    16 July 2018
    stated in
    Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    Regulation of the HAP1 gene involves positive actions of histone deacetylases
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    The Rpd3L HDAC complex is essential for the heat stress response in yeast.
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    16 July 2018
    stated in
    Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IGI
    retrieved
    16 July 2018
    stated in
    Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
    GOA
    curator
    SGD
    Saccharomyces Genome Database ID
    S000005274
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?protein=P32561&geneProductId=UniProtKB:P32561
    determination method or standard
    IGI
    positive regulation of transcription by RNA polymerase II
    determination method or standard
    IBA
    IGI
    IMP
    8 references
    retrieved
    9 May 2019
    stated in
    The Rpd3L HDAC complex is essential for the heat stress response in yeast.
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Regulation of the HAP1 gene involves positive actions of histone deacetylases
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IMP
    retrieved
    9 May 2019
    stated in
    Direct role for the Rpd3 complex in transcriptional induction of the anaerobic DAN/TIR genes in yeast
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IGI
    retrieved
    9 May 2019
    stated in
    Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes
    GOA
    curator
    SGD
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IGI
    retrieved
    9 May 2019
    stated in
    Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
    GOA
    curator
    GO Central
    reference URL
    http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P32561
    determination method or standard
    IBA

    Identifiers

     
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