Unexpected novel relational links uncovered by extensive developmental profiling of nuclear receptor expression (Q27314765)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17997606%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Unexpected novel relational links uncovered by extensive developmental profiling of nuclear receptor expression (English)

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10 January 2020

1

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10 January 2020

Arnaud Chaumot

5

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10 January 2020

Pierre-Luc Bardet

6

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10 January 2020

Hector Escriva

7

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10 January 2020

author name string

Bernard Thisse

2

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10 January 2020

Raquel Tavares

3

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10 January 2020

Laurent Sachs

4

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10 January 2020

Maryline Duffraisse

8

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10 January 2020

Oriane Marchand

9

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10 January 2020

Rachid Safi

10

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10 January 2020

Christine Thisse

11

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10 January 2020

Vincent Laudet

12

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10 January 2020

language of work or name

English

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publication date

1 November 2007

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10 January 2020

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10 January 2020

volume

3

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10 January 2020

page(s)

e188

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10 January 2020

issue

11

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Creative Commons Attribution 4.0 International

10 January 2020

copyright license

start time

9 November 2007

1 reference

April 2022 Public Data File from Crossref

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

The genome of the sea urchin Strongylocentrotus purpuratus

21 March 2017

1 reference

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Metabolic imprinting: critical impact of the perinatal environment on the regulation of energy homeostasis

21 March 2017

1 reference

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Tetraodon genome confirms Takifugu findings: most fish are ancient polyploids

21 March 2017

1 reference

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

21 March 2017

1 reference

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21 March 2017

1 reference

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The zebrafish moonshine gene encodes transcriptional intermediary factor 1gamma, an essential regulator of hematopoiesis

21 March 2017

1 reference

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Genomic analysis of mouse retinal development

21 March 2017

1 reference

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Genome duplication, a trait shared by 22000 species of ray-finned fish

21 March 2017

1 reference

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The probability of preservation of a newly arisen gene duplicate

21 March 2017

1 reference

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PGC-1, a versatile coactivator

21 March 2017

1 reference

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Comparison of complete nuclear receptor sets from the human, Caenorhabditis elegans and Drosophila genomes

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Preservation of duplicate genes by complementary, degenerative mutations

21 March 2017

1 reference

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Disruption of retinoid-related orphan receptor beta changes circadian behavior, causes retinal degeneration and leads to vacillans phenotype in mice

21 March 2017

1 reference

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Cloning and characterization of a corepressor and potential component of the nuclear hormone receptor repression complex

21 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 March 2017

1 reference

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 March 2017

1 reference

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Stages of embryonic development of the zebrafish

21 March 2017

1 reference

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Minireview: nuclear receptor coactivators--an update

21 March 2017

1 reference

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Peroxisome proliferator-activated receptor gamma coactivator 1 coactivators, energy homeostasis, and metabolism

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Anatomical profiling of nuclear receptor expression reveals a hierarchical transcriptional network

21 March 2017

1 reference

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Neofunctionalization in vertebrates: the example of retinoic acid receptors

21 March 2017

1 reference

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Principles for modulation of the nuclear receptor superfamily

21 March 2017

1 reference

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Coregulator function: a key to understanding tissue specificity of selective receptor modulators

21 March 2017

1 reference

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A method for estimating the numbers of synonymous and nonsynonymous substitutions per site

21 March 2017

1 reference

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xGCNF, a nuclear orphan receptor is expressed during neurulation in Xenopus laevis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Retinoid X receptor heterodimerization and developmental expression distinguish the orphan nuclear receptors NGFI-B, Nurr1, and Nor1

21 March 2017

1 reference

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Vertebrate vitellogenin gene duplication in relation to the "3R hypothesis": correlation to the pelagic egg and the oceanic radiation of teleosts

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

The photoreceptor-specific nuclear receptor Nr2e3 interacts with Crx and exerts opposing effects on the transcription of rod versus cone genes

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Transcriptional co-activator PGC-1 alpha drives the formation of slow-twitch muscle fibres

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

The probability of duplicate gene preservation by subfunctionalization

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Nuclear receptor expression links the circadian clock to metabolism

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

OTX5 regulates pineal expression of the zebrafish REV-ERB alpha through a new DNA binding site

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Comparison of the expression patterns of newly identified zebrafish retinoic acid and retinoid X receptors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Adaptive evolution of Hox-gene homeodomains after cluster duplications

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Dynamic regulation of Drosophila nuclear receptor activity in vivo

28 September 2017

1 reference

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Gene loss and evolutionary rates following whole-genome duplication in teleost fishes

28 September 2017

1 reference

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Nutrition, glucocorticoids and pancreas development

28 September 2017

1 reference

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Large-scale in silico and microarray-based identification of direct 1,25-dihydroxyvitamin D3 target genes

28 September 2017

1 reference

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Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes

28 September 2017

1 reference

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Fetal origins of insulin resistance and obesity

28 September 2017

1 reference

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Intron size and exon evolution in Drosophila

28 September 2017

1 reference

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Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1.

28 September 2017

1 reference

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Automated yeast two-hybrid screening for nuclear receptor-interacting proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

cis-Regulatory and protein evolution in orthologous and duplicate genes

28 September 2017

1 reference

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The evolution of the nuclear receptor superfamily

28 September 2017

1 reference

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Photoreceptor-specific nuclear receptor NR2E3 functions as a transcriptional activator in rod photoreceptors

28 September 2017

1 reference

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Retinal pattern and the genetic basis of its formation in zebrafish

28 September 2017

1 reference

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Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

28 September 2017

1 reference

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Asymmetric sequence divergence of duplicate genes

28 September 2017

1 reference

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Dragon ERE Finder version 2: A tool for accurate detection and analysis of estrogen response elements in vertebrate genomes

28 September 2017

1 reference

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Characterization of the peroxisome proliferator activated receptor coactivator 1 alpha (PGC 1alpha) expression in the murine brain

28 September 2017

1 reference

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Prenatal programming of postnatal endocrine responses by glucocorticoids

28 September 2017

1 reference

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Dopamine transporter expression distinguishes dopaminergic neurons from other catecholaminergic neurons in the developing zebrafish embryo.

28 September 2017

1 reference

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A thyroid hormone receptor that is required for the development of green cone photoreceptors

28 September 2017

1 reference

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Docosahexaenoic acid, a ligand for the retinoid X receptor in mouse brain

28 September 2017

1 reference

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The germ cell nuclear factor mGCNF is expressed in the developing nervous system.

28 September 2017

1 reference

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NUBIScan, an in silico approach for prediction of nuclear receptor response elements

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

The nuclear receptor transcription factor, retinoid-related orphan receptor beta, regulates retinal progenitor proliferation.

31 May 2018

1 reference

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Cellular expression of the immediate early transcription factors Nurr1 and NGFI-B suggests a gene regulatory role in several brain regions including the nigrostriatal dopamine system

31 May 2018

1 reference

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Two differentially active alternative promoters control the expression of the zebrafish orphan nuclear receptor gene Rev-erbalpha

31 May 2018

1 reference

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Functional diversification of B MADS-box homeotic regulators of flower development: Adaptive evolution in protein-protein interaction domains after major gene duplication events.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

The zebrafish orphan nuclear receptor genes nr2e1 and nr2e3 are expressed in developing eye and forebrain.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome.

28 November 2018

1 reference

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Spatial and temporal expression of the zebrafish genome by large-scale in situ hybridization screening.

28 November 2018

1 reference

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Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks.

28 November 2018

1 reference

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Evolutionary genomics of nuclear receptors: from twenty-five ancestral genes to derived endocrine systems.

28 November 2018

1 reference

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Differential expression of duplicated genes for brain-type fatty acid-binding proteins (fabp7a and fabp7b) during early development of the CNS in zebrafish (Danio rerio).

28 November 2018

1 reference

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Histone deacetylase 1 is required to repress Notch target gene expression during zebrafish neurogenesis and to maintain the production of motoneurones in response to hedgehog signalling

28 November 2018

1 reference

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Genomic background predicts the fate of duplicated genes: evidence from the yeast genome

28 November 2018

1 reference

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Genomic Background Drives the Divergence of Duplicated Amylase Genes at Synonymous Sites in Drosophila

28 November 2018

1 reference

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Temporal profiles of nuclear receptor gene expression reveal coordinate transcriptional responses during Drosophila development

28 November 2018

1 reference

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Differential regulation of Period 2 and Period 3 expression during development of the zebrafish circadian clock

28 November 2018

1 reference

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Effect of a diabetic environment in utero on predisposition to type 2 diabetes

28 November 2018

1 reference

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Computer-Assisted Generation of a Protein-Interaction Database for Nuclear Receptors

28 November 2018

1 reference

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Otx5 regulates genes that show circadian expression in the zebrafish pineal complex

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Evolutionary rates of duplicate genes in fish and mammals.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

An inherited functional circadian clock in zebrafish embryos.

28 November 2018

1 reference

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RRTree: relative-rate tests between groups of sequences on a phylogenetic tree.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Developmental expression and differential regulation by retinoic acid of Xenopus COUP-TF-A and COUP-TF-B.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

An evolutionary conserved COUP-TF binding element in a neural-specific gene and COUP-TF expression patterns support a major role for COUP-TF in neural development

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065881

Dorsal and ventral rentinoic territories defined by retinoic acid synthesis, break-down and nuclear receptor expression

28 November 2018

1 reference

12 December 2020

Developmental expression of the estrogen receptor-related receptor γ in the nervous system during mouse embryogenesis

1 reference

12 December 2020

How many nuclear hormone receptors are there in the human genome?

1 reference

12 December 2020

How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution?

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.0030188

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17997606%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17997606%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference