Ontology-supported research on vaccine efficacy, safety and integrative biological networks (Q27005991)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

title

Ontology-supported research on vaccine efficacy, safety and integrative biological networks (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

0 references

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1

Yongqun He

1 reference

language of work or name

1 reference

7 June 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

Expert Review of Vaccines

20 March 2020

published in

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

volume

13

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

issue

7

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

page(s)

825-841

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

Updates on the web-based VIOLIN vaccine database and analysis system

20 March 2020

cites work

1 reference

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21 March 2017

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Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology

21 March 2017

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Protegen: a web-based protective antigen database and analysis system

7 April 2017

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Vaxign: the first web-based vaccine design program for reverse vaccinology and applications for vaccine development

21 March 2017

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

21 March 2017

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MIFlowCyt: the minimum information about a Flow Cytometry Experiment

21 March 2017

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VIOLIN: vaccine investigation and online information network

21 March 2017

1 reference

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The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

21 March 2017

1 reference

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GoPubMed: exploring PubMed with the Gene Ontology

21 March 2017

1 reference

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Gene ontology: tool for the unification of biology

21 March 2017

1 reference

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A unifying concept: the history of cell theory

21 March 2017

1 reference

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The KEGG resource for deciphering the genome

21 March 2017

1 reference

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

21 March 2017

1 reference

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Building Linked Open Data towards integration of biomedical scientific literature with DBpedia

21 March 2017

1 reference

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The BioPAX community standard for pathway data sharing

21 March 2017

1 reference

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Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

21 March 2017

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Ontological realism: A methodology for coordinated evolution of scientific ontologies

21 March 2017

1 reference

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Reactome: a database of reactions, pathways and biological processes

21 March 2017

1 reference

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Modeling biomedical experimental processes with OBI

21 March 2017

1 reference

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CLO: The cell line ontology

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Eukaryotic cells and their cell bodies: Cell Theory revised

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

A reference ontology for biomedical informatics: the Foundational Model of Anatomy

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Using Bayesian networks to analyze expression data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

SYFPEITHI: database for MHC ligands and peptide motifs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

DNAVaxDB: the first web-based DNA vaccine database and its data analysis.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Ontodog: a web-based ontology community view generation tool

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Jenner-predict server: prediction of protein vaccine candidates (PVCs) in bacteria based on host-pathogen interactions.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Databases and in silico tools for vaccine design

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Immunogenic and invasive properties of Brucella melitensis 16M outer membrane protein vaccine candidates identified via a reverse vaccinology approach

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Analyses of Brucella pathogenesis, host immunity, and vaccine targets using systems biology and bioinformatics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Current status and future directions of post-marketing vaccine safety monitoring with focus on USA and Europe

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Basic research in HIV vaccinology is hampered by reductionist thinking

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Browsing metabolic and regulatory networks with BioCyc

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Systems vaccinology: learning to compute the behavior of vaccine induced immunity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Emerging vaccine informatics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Systems biology of vaccination for seasonal influenza in humans

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Vaccinomics and a new paradigm for the development of preventive vaccines against viral infections

28 September 2017

1 reference

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Designing the next generation of vaccines for global public health

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Mapping between the OBO and OWL ontology languages

28 September 2017

1 reference

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28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Bioinformatics analysis of Brucella vaccines and vaccine targets using VIOLIN

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

OntoFox: web-based support for ontology reuse

28 September 2017

1 reference

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A global map of human gene expression

28 September 2017

1 reference

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Malaria vaccine: the pros and cons

28 September 2017

1 reference

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Bayesian network expansion identifies new ROS and biofilm regulators

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Hematopoietic cell types: prototype for a revised cell ontology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

The immune epitope database 2.0.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Invited review: Use of meta-analysis in animal health and reproduction: methods and applications

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

GoGene: gene annotation in the fast lane

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Application of pharmacogenomics to vaccines

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Interpreting microarray results with gene ontology and MeSH.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

SNOMED CT: utility for a general medical evaluation template.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Electronic data sources for kinetic models of cell signaling

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Vaccine information statements. Revolutionary but neglected educational advances in healthcare in the United States

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Understanding vaccine safety information from the Vaccine Adverse Event Reporting System

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Methods and pitfalls in searching drug safety databases utilising the Medical Dictionary for Regulatory Activities (MedDRA).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

MeSHmap: a text mining tool for MEDLINE.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Twin studies of immunogenicity--determining the genetic contribution to vaccine failure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Statistics in medical journals: some recent trends

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Medical Subject Headings (MeSH).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

28 September 2017

Immune network theory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

Large scale comparison of global gene expression patterns in human and mouse.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815432

In silico prediction of conserved vaccine targets in Streptococcus agalactiae strains isolated from fish, cattle, and human samples.

31 May 2018

1 reference

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Personalized vaccines: the emerging field of vaccinomics

21 January 2018

1 reference

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Pellet: A practical OWL-DL reasoner

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14760584.2014.923762

MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14760584.2014.923762

Primary, Secondary, and Meta-Analysis of Research

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14760584.2014.923762

Linked data – the story so far

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14760584.2014.923762

SNAP and SPAN: Towards Dynamic Spatial Ontology

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14760584.2014.923762

The Vaccine Adverse Event Reporting System (VAERS)

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24909153

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1586/14760584.2014.923762

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24909153%20AND%20SRC:MED&resulttype=core&format=json

20 March 2020

2 references