Bioinformatics approaches for functional annotation of membrane proteins (Q27002674)

language of work or name

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March 2014

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Briefings in Bioinformatics

published in

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volume

15

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issue

2

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page(s)

155-68

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Membrane protein folding and stability: physical principles

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Transmembrane beta-barrel proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Current developments on beta-barrel membrane proteins: sequence and structure analysis, discrimination and prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Topology prediction of helical transmembrane proteins: how far have we reached?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Progress in structure prediction of alpha-helical membrane proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Towards genome-scale structure prediction for transmembrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Protein folding in membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Transmembrane protein structures without X-rays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Membrane protein prediction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

An introduction to membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Membrane-protein topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

beta-Barrel membrane bacterial proteins: structure, function, assembly and interaction with lipids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Bioinformatic approaches for the structure and function of membrane proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

A functional-phylogenetic classification system for transmembrane solute transporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

TCDB: the Transporter Classification Database for membrane transport protein analyses and information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Gating the selectivity filter in ClC chloride channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Behavioural neurobiology: The treacherous scent of a human

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Odorant reception in the malaria mosquito Anopheles gambiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

GPCRDB: an information system for G protein-coupled receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Local homology recognition and distance measures in linear time using compressed amino acid alphabets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using a support vector machine and a hidden Markov model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

The Rice PIPELINE: a unification tool for plant functional genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Membrane interactive alpha-helices in GPCRs as a novel drug target

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Comparative modeling: the state of the art and protein drug target structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Oligomerization of G protein-coupled receptors: computational methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

The Transporter Classification Database: recent advances

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Medicago truncatula transporter database: a comprehensive database resource for M. truncatula transporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

ABCdb: an online resource for ABC transporter repertories from sequenced archaeal and bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

ABCMdb: a database for the comparative analysis of protein mutations in ABC transporters, and a potential framework for a general application

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

GATMD: γ-aminobutyric acid transporter mutagenesis database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

TSdb: a database of transporter substrates linking metabolic pathways and transporter systems on a genome scale via their shared substrates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

From genomics to chemical genomics: new developments in KEGG

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Olfactory Receptor Database: a metadata-driven automated population from sources of gene and protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

LGICdb: a manually curated sequence database after the genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

VKCDB: voltage-gated K+ channel database updated and upgraded

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

MIPModDB: a central resource for the superfamily of major intrinsic proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

A transmembrane helix dimer: structure and implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Transmembrane glycine zippers: physiological and pathological roles in membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Transmembrane domain of myelin protein zero can form dimers: possible implications for myelin construction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Eukaryote-wide sequence analysis of mitochondrial β-barrel outer membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

MeMotif: a database of linear motifs in alpha-helical transmembrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

TMFunction: database for functional residues in membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Computational Biology of Olfactory Receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Insight in eukaryotic ABC transporter function by mutation analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Functional discrimination of membrane proteins using machine learning techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

A simple statistical method for discriminating outer membrane proteins with better accuracy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

TransportTP: a two-phase classification approach for membrane transporter prediction and characterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

A nearest neighbor approach for automated transporter prediction and categorization from protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

SLITHER: a web server for generating contiguous conformations of substrate molecules entering into deep active sites of proteins or migrating through channels in membrane transporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Predicting P-glycoprotein-mediated drug transport based on support vector machine and three-dimensional crystal structure of P-glycoprotein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

MolAxis: a server for identification of channels in macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

VGIchan: prediction and classification of voltage-gated ion channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Identification of voltage-gated potassium channel subfamilies from sequence information using support vector machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Predict potential drug targets from the ion channel proteins based on SVM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Computational identification of residues that modulate voltage sensitivity of voltage-gated potassium channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Prediction of ion channel activity using binary kernel discrimination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

MEDELLER: homology-based coordinate generation for membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Structural models of the transmembrane region of voltage-gated and other K+ channels in open, closed, and inactivated conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Ion channels: structural bioinformatics and modelling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

The structures of BtuCD and MscS and their implications for transporter and channel function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Molecular modeling and simulation studies of ion channel structures, dynamics and mechanisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Binding site of ABC transporter homology models confirmed by ABCB1 crystal structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Multidrug resistance ABC transporter structure predictions by homology modeling approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

FoldGPCR: structure prediction protocol for the transmembrane domain of G protein-coupled receptors from class A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

3D Structural Models of Transmembrane Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Homology modeling of transporter proteins (carriers and ion channels).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Dissecting membrane insertion of mitochondrial beta-barrel proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Functional classification of membrane transporters and channels based on filtered TM/non-TM amino acid composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Classifying Substrate Specificities of Membrane Transporters fromArabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

Mitochondrial beta-barrel proteins, an exclusive club?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBT015

21 January 2018

Identifiers

DOI

10.1093/BIB/BBT015

0 references

DBLP publication ID

journals/bib/GromihaO14

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PubMed publication ID

23524979

1 reference