MolAxis: a server for identification of channels in macromolecules (Q36749375)

16 August 2017

MolAxis: a server for identification of channels in macromolecules (English)

1 reference

16 August 2017

1 reference

5

Ruth Nussinov

1 reference

16 August 2017

3

Haim J Wolfson

1 reference

16 August 2017

Eitan Yaffe

1

1 reference

16 August 2017

Dan Fishelovitch

series ordinal

2

1 reference

16 August 2017

Dan Halperin

series ordinal

4

1 reference

16 August 2017

language of work or name

English

0 references

publication date

29 April 2008

1 reference

16 August 2017

Nucleic Acids Research

1 reference

16 August 2017

36

1 reference

16 August 2017

Web Server issue

1 reference

16 August 2017

W210-5

1 reference

MolAxis: efficient and accurate identification of channels in macromolecules

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Detection, delineation, measurement and display of cavities in macromolecular structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Characterization of the catalase-peroxidase KatG from Burkholderia pseudomallei by mass spectrometry.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

The pore dimensions of gramicidin A.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

The Protein Data Bank. A computer-based archival file for macromolecular structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

MOLE: a Voronoi diagram-based explorer of molecular channels, pores, and tunnels.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Role of the main access channel of catalase-peroxidase in catalysis.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Distal site aspartate is essential in the catalase activity of catalase-peroxidases

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Reduced affinity for Isoniazid in the S315T mutant of Mycobacterium tuberculosis KatG is a key factor in antibiotic resistance

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Nicotinic acetylcholine receptor at 4.6 A resolution: transverse tunnels in the channel wall.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

LIGSITE: automatic and efficient detection of potential small molecule-binding sites in proteins

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

The role of conserved leucines in the M2 domain of the acetylcholine receptor in channel gating.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447770

Nicotinic acetylcholine receptor at 9 A resolution.

5 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18448468

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN223

1 reference

16 August 2017

journals/nar/YaffeFWHN08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 August 2017

1 reference