Regulator trafficking on bacterial transcription units in vivo (Q24650920)

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Sarah E Davis

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Jason M Peters

3

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Jennifer L Rowland

4

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Aseem Z Ansari

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

5

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language of work or name

English

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publication date

16 January 2009

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published in

Molecular Cell

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volume

33

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issue

1

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page(s)

97-108

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cites work

1 reference

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Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

7 April 2017

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Structural Basis for Converting a General Transcription Factor into an Operon-Specific Virulence Regulator

7 April 2017

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Crystal structures of transcription factor NusG in light of its nucleic acid- and protein-binding activities

7 April 2017

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Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

7 April 2017

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Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

7 April 2017

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RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

7 April 2017

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The transition from transcriptional initiation to elongation

7 April 2017

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A chromatin landmark and transcription initiation at most promoters in human cells

7 April 2017

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The ENCODE (ENCyclopedia Of DNA Elements) Project

7 April 2017

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RNA polymerase is poised for activation across the genome

7 April 2017

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Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli

7 April 2017

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Transcription regulation through promoter-proximal pausing of RNA polymerase II.

28 September 2017

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Poising of Escherichia coli RNA polymerase and its release from the sigma 38 C-terminal tail for osmY transcription

28 September 2017

1 reference

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A transcription antiterminator constructs a NusA-dependent shield to the emerging transcript

28 September 2017

1 reference

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Genomic analysis of protein-DNA interactions in bacteria: insights into transcription and chromosome organization

28 September 2017

1 reference

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Environmental regulation operating at the promoter clearance step of bacterial transcription.

28 September 2017

1 reference

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Chromatin immunoprecipitation and microarray-based analysis of protein location

28 September 2017

1 reference

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Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA

28 September 2017

1 reference

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Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

28 September 2017

1 reference

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Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo

28 September 2017

1 reference

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Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

28 September 2017

1 reference

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Sigma and RNA polymerase: an on-again, off-again relationship?

28 September 2017

1 reference

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Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Association of RNA polymerase with transcribed regions in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Tethering sigma70 to RNA polymerase reveals high in vivo activity of sigma factors and sigma70-dependent pausing at promoter-distal locations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Rho-dependent termination and ATPases in transcript termination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism invitro

28 September 2017

1 reference

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Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

The alpha subunit of E. coli RNA polymerase activates RNA binding by NusA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

In vivo cross-linking and immunoprecipitation for studying dynamic Protein:DNA associations in a chromatin environment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Autogenous regulation of the gene for transcription termination factor rho in Escherichia coli: localization and function of its attenuators

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Combinatorial effects of NusA and NusG on transcription elongation and Rho-dependent termination in Escherichia coli

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Function of E. coli RNA polymerase sigma factor sigma 70 in promoter-proximal pausing

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Rho-dependent transcription termination at lambda R1 requires upstream sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Release of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase depends mainly on time elapsed after the start of initiation, not on length of product RNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Requirement for E. coli NusG protein in factor-dependent transcription termination

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage lambda

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage lambda

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

The NusA and NusG proteins of Escherichia coli increase the in vitro readthrough frequency of a transcriptional attenuator preceding the gene for the beta subunit of RNA polymerase

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

An alternate mechanism of abortive release marked by the formation of very long abortive transcripts.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

RNA-mediated destabilization of the sigma(70) region 4/beta flap interaction facilitates engagement of RNA polymerase by the Q antiterminator

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Isolation and characterization of sigma(70)-retaining transcription elongation complexes from Escherichia coli

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Cryptic operon for beta-glucoside metabolism in Escherichia coli K12: genetic evidence for a regulatory protein.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2747249

Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcription

28 November 2018

1 reference

12 December 2020

Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit

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12 December 2020

Transcription attenuation: a highly conserved regulatory strategy used by bacteria

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12 December 2020

Function of transcription cleavage factors GreA and GreB at a regulatory pause site

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12 December 2020

Pausing and termination of transcription within the early region of bacteriophage T7 DNA in vitro

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12 December 2020

Interaction of the sigma factor and the nusA gene protein of E. coli with RNA polymerase in the initiation-termination cycle of transcription

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12 December 2020

Termination of transcription by nusA gene protein of Escherichia coli

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12 December 2020

Effects of NusA protein on transcription termination in the tryptophan operon of Escherichia coli

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12 December 2020

10.1016/J.MOLCEL.2008.12.021

Identifiers

DOI

1 reference

1271121

1271121

1 reference

1 reference

1 reference