Opening and closing of the bacterial RNA polymerase clamp (Q24633938)

8

Sivaramesh

Wigneshweraraj

1 reference

15 January 2024

Richard H Ebright

14

Richard H

Ebright

1 reference

15 January 2024

Shimon Weiss

13

Shimon

Weiss

1 reference

15 January 2024

Anirban Chakraborty

1

Anirban

Chakraborty

1 reference

15 January 2024

Dongye Wang

2

Dongye

Wang

1 reference

15 January 2024

Yon W Ebright

3

Yon W

Ebright

1 reference

15 January 2024

You Korlann

4

You

Korlann

1 reference

15 January 2024

Ekaterine Kortkhonjia

5

Ekaterine

Kortkhonjia

1 reference

15 January 2024

Taiho Kim

6

Taiho

Kim

1 reference

15 January 2024

Herbert Irschik

9

Herbert

Irschik

1 reference

15 January 2024

Rolf Jansen

10

Rolf

Jansen

1 reference

15 January 2024

B Tracy Nixon

11

B Tracy

Nixon

1 reference

15 January 2024

Jennifer Knight

12

Jennifer

New target for inhibition of bacterial RNA polymerase: 'switch region'

Knight

1 reference

15 January 2024

language of work or name

English

0 references

publication date

3 August 2012

0 references

published in

Science

0 references

volume

337

0 references

page(s)

591-5

0 references

issue

6094

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

The RNA polymerase "switch region" is a target for inhibitors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Transcription inactivation through local refolding of the RNA polymerase structure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Direct observation of base-pair stepping by RNA polymerase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Structural basis for transcription elongation by bacterial RNA polymerase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Cell surface engineering by a modified Staudinger reaction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Calculation of protein extinction coefficients from amino acid sequence data

7 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1218716

Engagement of Arginine Finger to ATP Triggers Large Conformational Changes in NtrC1 AAA+ ATPase for Remodeling Bacterial RNA Polymerase

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1218716

Three-dimensional EM structure of an intact activator-dependent transcription initiation complex

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1218716

Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1218716

CHARMM: the biomolecular simulation program

22 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.1218716

Molecular mechanism of transcription inhibition by phage T7 gp2 protein

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Mechanisms for activating bacterial RNA polymerase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Bacterial RNA polymerase inhibitors: an organized overview of their structure, derivatives, biological activity and current clinical development status

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Conformational flexibility of bacterial RNA polymerase.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

RNA polymerase clamps down

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Rapid RNA polymerase genetics: one-day, no-column preparation of reconstituted recombinant Escherichia coli RNA polymerase.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Azide-specific labeling of biomolecules by Staudinger-Bertozzi ligation phosphine derivatives of fluorescent probes suitable for single-molecule fluorescence spectroscopy

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3626110

Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli

30 May 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Competing for the clamp: promoting RNA polymerase processivity and managing the transition from initiation to elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Discontinuous movements of DNA and RNA in RNA polymerase accompany formation of a paused transcription complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Tethering of the large subunits of Escherichia coli RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Transcription activation at class II CAP-dependent promoters: two interactions between CAP and RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Enhancer-dependent transcription by bacterial RNA polymerase: the beta subunit downstream lobe is used by sigma 54 during open promoter complex formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Structural insights into the activity of enhancer-binding proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Interactions of regulated and deregulated forms of the sigma54 holoenzyme with heteroduplex promoter DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Fluorescence resonance energy transfer and nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Orientation factor in steady-state and time-resolved resonance energy transfer measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Distance-restrained docking of rifampicin and rifamycin SV to RNA polymerase using systematic FRET measurements: developing benchmarks of model quality and reliability

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

MATCH: an atom-typing toolset for molecular mechanics force fields.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1218716

21 January 2018

Identifiers

DOI

10.1126/SCIENCE.1218716

1 reference

2722876

2722876

1 reference

1 reference

1 reference