A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase (Q33927355)

30 July 2017

A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase (English)

1 reference

30 July 2017

Patricia C Burrows

1

1 reference

30 July 2017

Nicolas Joly

series ordinal

2

1 reference

30 July 2017

Martin Buck

series ordinal

3

1 reference

30 July 2017

language of work or name

English

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publication date

3 May 2010

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Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

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30 July 2017

107

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30 July 2017

20

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30 July 2017

9376-9381

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Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Running in Reverse: The Structural Basis for Translocation Polarity in Hexameric Helicases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

RNA polymerase II-TFIIB structure and mechanism of transcription initiation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

The role of the conserved phenylalanine in the sigma54-interacting GAFTGA motif of bacterial enhancer binding proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Comparative analysis of activator-Esigma54 complexes formed with nucleotide-metal fluoride analogues

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Direct detection of abortive RNA transcripts in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Coupling sigma factor conformation to RNA polymerase reorganisation for DNA melting

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Organization of an activator-bound RNA polymerase holoenzyme

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

The RNA polymerase "switch region" is a target for inhibitors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

The AAA+ superfamily--a myriad of motions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

The structural basis for regulated assembly and function of the transcriptional activator NtrC.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Alternative sigma factors and their roles in bacterial virulence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

AAA+ proteins: have engine, will work

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Structural insights into the activity of enhancer-binding proteins.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Reorganisation of an RNA polymerase-promoter DNA complex for DNA melting.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Enhancer-dependent transcription by bacterial RNA polymerase: the beta subunit downstream lobe is used by sigma 54 during open promoter complex formation.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: identifying a surface that binds sigma 54.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Views of transcription initiation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

AAA+ superfamily ATPases: common structure--diverse function

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Mechanism of ATP-dependent promoter melting by transcription factor IIH

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Promoter opening via a DNA fork junction binding activity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Multiple pathways to bypass the enhancer requirement of sigma 54 RNA polymerase: roles for DNA and protein determinants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Function of a bacterial activator protein that binds to transcriptional enhancers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

A bacterial enhancer functions to tether a transcriptional activator near a promoter.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2889110

Evolutionary history and higher order classification of AAA+ ATPases

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Transcription inactivation through local refolding of the RNA polymerase structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Structural organization of the RNA polymerase-promoter open complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Crystal structure of the central and C-terminal domain of the sigma(54)-activator ZraR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

A novel bacterial transcription cycle involving sigma 54.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Unusual oligomerization required for activity of NtrC, a bacterial enhancer-binding protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

ATP ground- and transition states of bacterial enhancer binding AAA+ ATPases support complex formation with their target protein, sigma54.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Allosteric control of Escherichia coli rRNA promoter complexes by DksA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Isomerization of a binary sigma-promoter DNA complex by transcription activators.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Unusual promoter-independent transcription reactions with bacteriophage RNA polymerases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Coupling nucleotide hydrolysis to transcription activation performance in a bacterial enhancer binding protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Molecular determinants for PspA-mediated repression of the AAA transcriptional activator PspF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

The sigma 54 DNA-binding domain includes a determinant of enhancer responsiveness.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

Converting Escherichia coli RNA polymerase into an enhancer-responsive enzyme: role of an NH2-terminal leucine patch in sigma 54.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

A stepwise 2'-hydroxyl activation mechanism for the bacterial transcription termination factor Rho helicase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1001188107

21 January 2018

Identifiers

DOI

10.1073/PNAS.1001188107

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference