Thermodynamic prediction of protein neutrality (Q24557480)

6

Frances H Arnold

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Jesse D. Bloom

Jesse D Bloom

1

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Christoph Adami

Christoph Adami

5

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Claus O. Wilke

Claus O Wilke

3

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author name string

Jonathan J Silberg

Proceedings of the National Academy of Sciences of the United States of America

2

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language of work or name

English

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publication date

18 January 2005

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published in

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volume

102

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page(s)

606-11

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issue

3

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cites work

Evolution of an antibiotic resistance enzyme constrained by stability and activity trade-offs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Enhancement of protein stability by the combination of point mutations in T4 lysozyme is additive

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

CATH--a hierarchic classification of protein domain structures

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Protein tolerance to random amino acid change

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

ProTherm, version 4.0: thermodynamic database for proteins and mutants

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Exploring conformational space with a simple lattice model for protein structure

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Principles that govern the folding of protein chains

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Perspectives on protein evolution from simple exact models.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Simulating protein evolution in sequence and structure space

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Funnel-like organization in sequence space determines the distributions of protein stability and folding rate preferred by evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Library analysis of SCHEMA-guided protein recombination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Evolution of mutational robustness

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Why are proteins so robust to site mutations?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Quantitative analysis of the effect of the mutation frequency on the affinity maturation of single chain Fv antibodies

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Modeling evolutionary landscapes: mutational stability, topology, and superfunnels in sequence space

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Alteration of T4 lysozyme structure by second-site reversion of deleterious mutations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Generation of large libraries of random mutants in Bacillus subtilis by PCR-based plasmid multimerization

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Symmetry and the energy landscapes of biomolecules

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Why are some proteins structures so common?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Engineering of stable and fast-folding sequences of model proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Principles of protein folding--a perspective from simple exact models.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Genetic analysis of staphylococcal nuclease: identification of three intragenic "global" suppressors of nuclease-minus mutations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Bacteriophage lambda cro mutations: effects on activity and intracellular degradation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Influence of point mutations on protein structure: probability of a neutral mutation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Additivity of mutational effects in proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Systematic mutation of bacteriophage T4 lysozyme.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Emergence of Preferred Structures in a Simple Model of Protein Folding

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406744102

Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406744102

The polymerase chain reaction and branching processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406744102

PoPMuSiC, an algorithm for predicting protein mutant stability changes: application to prion proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406744102

Protein folding mechanisms and the multidimensional folding funnel.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Step-wise mutation of barnase to binase. A procedure for engineering increased stability of proteins and an experimental analysis of the evolution of protein stability

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545518

Stability of Designed Proteins against Mutations

28 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406744102

Complete mutagenesis of the HIV-1 protease

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0406744102

Structural determinant of protein designability

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15644440

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sequence does specify protein conformation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15644440

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Estimating the prevalence of protein sequences adopting functional enzyme folds

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15644440

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0406744102

1 reference

0 references

1 reference

1031150

1 reference

1 reference

1 reference