Requirements for intron-mediated enhancement of gene expression in Arabidopsis. (Q24540162)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458797%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

title

Requirements for intron-mediated enhancement of gene expression in Arabidopsis (English)

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15 December 2019

1

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15 December 2019

author name string

Alan B Rose

series ordinal

1

1 reference

PubMed ID

12458797

6 July 2017

language of work or name

English

0 references

publication date

1 November 2002

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15 December 2019

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15 December 2019

volume

8

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15 December 2019

page(s)

1444-1453

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15 December 2019

issue

11

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TREX is a conserved complex coupling transcription with messenger RNA export

15 December 2019

cites work

1 reference

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Tissue-preferential expression of a rice alpha-tubulin gene, OsTubA1, mediated by the first intron

24 March 2017

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A nuclear cap binding protein complex involved in pre-mRNA splicing

24 March 2017

1 reference

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Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

24 March 2017

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Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p

24 March 2017

1 reference

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Stimulatory effect of splicing factors on transcriptional elongation

24 March 2017

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Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly

24 March 2017

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Arabidopsis TCH3 encodes a novel Ca2+ binding protein and shows environmentally induced and tissue-specific regulation

24 March 2017

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Integrating mRNA processing with transcription

24 March 2017

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An extensive network of coupling among gene expression machines

24 March 2017

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Alternative pre-mRNA splicing and proteome expansion in metazoans

7 April 2017

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Messenger-RNA-binding proteins and the messages they carry

7 April 2017

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A unified theory of gene expression

7 April 2017

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The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay

7 April 2017

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RNA polymerase II and the integration of nuclear events

7 April 2017

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A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance

7 April 2017

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Reversible phosphorylation of the C-terminal domain of RNA polymerase II

7 April 2017

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Curbing the nonsense: the activation and regulation of mRNA surveillance

7 April 2017

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A computational analysis of sequence features involved in recognition of short introns

27 September 2017

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Nonsense-mediated decay of glutathione peroxidase 1 mRNA in the cytoplasm depends on intron position

27 September 2017

1 reference

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UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation

27 September 2017

1 reference

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Pre-mRNA splicing in higher plants.

27 September 2017

1 reference

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Splicing is required for rapid and efficient mRNA export in metazoans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intron-exon structures of eukaryotic model organisms

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Coupling RNA polymerase II transcription with pre-mRNA processing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

mRNA polyadenylation and its coupling to other RNA processing reactions and to transcription

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Phosphorylated RNA polymerase II stimulates pre-mRNA splicing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

At least one intron is required for the nonsense-mediated decay of triosephosphate isomerase mRNA: a possible link between nuclear splicing and cytoplasmic translation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Nuclear history of a pre-mRNA determines the translational activity of cytoplasmic mRNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Introns act post-transcriptionally to increase expression of the Arabidopsis thaliana tryptophan pathway gene PAT1.

27 September 2017

1 reference

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Splicing factors associate with hyperphosphorylated RNA polymerase II in the absence of pre-mRNA

27 September 2017

1 reference

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Evolution of the intron-exon structure of eukaryotic genes

27 September 2017

1 reference

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Characterization of intronic uridine-rich sequence elements acting as possible targets for nuclear proteins during pre-mRNA splicing in Nicotiana plumbaginifolia

27 September 2017

1 reference

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Sequence requirements for myosin gene expression and regulation in Caenorhabditis elegans

27 September 2017

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The 5'-region of Arabidopsis thaliana cor15a has cis-acting elements that confer cold-, drought- and ABA-regulated gene expression

27 September 2017

1 reference

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Comparison of intron-dependent and intron-independent gene expression

27 September 2017

1 reference

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Introns increase gene expression in cultured maize cells

27 September 2017

1 reference

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Regulatory elements in the 5'-flanking region and the first intron contribute to transcriptional control of the mouse alpha 1 type I collagen gene

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Regulatory elements in the first intron contribute to transcriptional regulation of the beta 3 tubulin gene by 20-hydroxyecdysone in Drosophila Kc cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intron-mediated enhancement of heterologous gene expression in maize

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

A generic intron increases gene expression in transgenic mice

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intervening sequences increase efficiency of RNA 3' processing and accumulation of cytoplasmic RNA

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intron splicing and intron-mediated enhanced expression in monocots

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Pre-mRNA processing and the CTD of RNA polymerase II: the tail that wags the dog?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intron-mediated enhancement of gene expression independent of unique intron sequences and splicing

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Transcription units as RNA processing units

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intron-mediated enhancement of transgene expression in maize is a nuclear, gene-dependent process.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Developmental regulation of the Drosophila tropomyosin II gene in different muscles is controlled by muscle-type-specific intron enhancer elements and distal and proximal promoter control elements.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

The intron of Arabidopsis thaliana polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intron creation and polyadenylation in maize are directed by AU-rich RNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

The combination of a novel stimulatory element in the first exon of the maize Shrunken-1 gene with the following intron 1 enhances reporter gene expression up to 1000-fold

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Bronze-2 Gene Expression and Intron Splicing Patterns in Cells and Tissues of Zea mays L.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Regulation of the cell expansion gene RHD3 during Arabidopsis development.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Separable whorl-specific expression and negative regulation by enhancer elements within the AGAMOUS second intron.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Telomerase activity and phenotypic characterization in harvested bone marrow from a child with a germline cell cancer.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Intron position affects expression from the tpi promoter in rice.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

atpk1, a novel ribosomal protein kinase gene from Arabidopsis. I. Isolation, characterization, and expression.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

The regulation of gene expression in transformed maize aleurone and endosperm protoplasts. Analysis of promoter activity, intron enhancement, and mRNA untranslated regions on expression.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Sequences downstream of translation start regulate quantitative expression of two petunia rbcS genes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370350

Internal AU-rich elements modulate activity of two competing 3' splice sites in plant nuclei

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12458797

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Addition of A- and U-rich sequence increases the splicing efficiency of a deleted form of a maize intron

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12458797

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Arabidopsis consensus intron sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12458797

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1017/S1355838202020551

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458797%20AND%20SRC:MED&resulttype=core&format=json

OpenCitations bibliographic resource ID

15 December 2019

2159260

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12458797%20AND%20SRC:MED&resulttype=core&format=json

15 December 2019

1 reference