Direct real time observation of base flipping by the EcoRI DNA methyltransferase (Q38340696)

2 September 2017

Direct real time observation of base flipping by the EcoRI DNA methyltransferase (English)

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2 September 2017

Allan BW

1

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2 September 2017

Beechem JM

series ordinal

2

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2 September 2017

Lindstrom WM

series ordinal

3

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2 September 2017

Reich NO

series ordinal

4

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2 September 2017

language of work or name

English

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publication date

1 January 1998

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Journal of Biological Chemistry

2 September 2017

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2 September 2017

273

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2 September 2017

4

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2 September 2017

2368-2373

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Structural studies of protein-nucleic acid interaction: the sources of sequence-specific binding

2 September 2017

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Transcription factors: structural families and principles of DNA recognition

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

HhaI methyltransferase flips its target base out of the DNA helix

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

The crystal structure of HaeIII methyltransferase convalently complexed to DNA: an extrahelical cytosine and rearranged base pairing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Targeted base stacking disruption by the EcoRI DNA methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Finding a basis for flipping bases.

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Sequence-specific recognition of double helical nucleic acids by proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

M.HhaI binds tightly to substrates containing mismatches at the target base

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

HhaI and HpaII DNA methyltransferases bind DNA mismatches, methylate uracil and block DNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Base analog and neighboring base effects on substrate specificity of recombinant human G:T mismatch-specific thymine DNA-glycosylase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

DNA determinants and substrate specificities of Escherichia coli MutY.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Stereochemical studies of the C-methylation of deoxycytidine catalyzed by HhaI methylase and the N-methylation of deoxyadenosine catalyzed by EcoRI methylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Influence of 5'-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3'-exonuclease activity of bacteriophage T4 DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Real-time fluorescence assay system for gene transcription: simultaneous observation of protein/DNA binding, localized DNA melting, and mRNA production

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

A direct real-time spectroscopic investigation of the mechanism of open complex formation by T7 RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

A fluorescence-based assay for monitoring helicase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

ATP hydrolysis stimulates binding and release of single stranded DNA from alternating subunits of the dimeric E. coli Rep helicase: implications for ATP-driven helicase translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Base pairing and mutagenesis: observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

A general method for the purification of restriction enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

EcoRI DNA methyltransferase-DNA interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Facilitated diffusion of the EcoRI DNA methyltransferase is described by a novel mechanism

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Base pair opening dynamics of a 2-aminopurine substituted Eco RI restriction sequence and its unsubstituted counterpart in oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Comparative NMR analysis of the decadeoxynucleotide d-(GCATTAATGC)2 and an analogue containing 2-aminoadenine

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

T4 RNA ligase catalyzed synthesis of base analogue-containing oligodeoxyribonucleotides and a characterization of their thermal stabilities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Sequence-specific recognition of cytosine C5 and adenine N6 DNA methyltransferases requires different deformations of DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Three-dimensional structure of the adenine-specific DNA methyltransferase M.Taq I in complex with the cofactor S-adenosylmethionine

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Global analysis of biochemical and biophysical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Simultaneous binding and bending of promoter DNA by the TATA binding protein: real time kinetic measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Kinetics and energetics of base-pair opening in 5'-d(CGCGAATTCGCG)-3' and a substituted dodecamer containing G.T mismatches

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Kinetic mechanism of the EcoRI DNA methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

The EcoRV modification methylase causes considerable bending of DNA upon binding to its recognition sequence GATATC

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Mg(2+)-dependent conformational changes in the hammerhead ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Crystal structure of a Z-DNA fragment containing thymine/2-aminoadenine base pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

The PvuII DNA (cytosine-N4)-methyltransferase comprises two trypsin-defined domains, each of which binds a molecule of S-adenosyl-L-methionine

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

Consequences of methylation on the amino group of adenine. A proton two-dimensional NMR study of d(GGATATCC) and d(GGm6ATATCC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.273.4.2368

21 January 2018

Identifiers

DOI

10.1074/JBC.273.4.2368

1 reference

2 September 2017

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