ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines (Q24490324)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26236465%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines (English)

1 reference

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20 February 2020

0 references

1

1 reference

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20 February 2020

Jörg Fallmann

2

1 reference

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20 February 2020

Florian Eggenhofer

3

1 reference

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20 February 2020

Fabian Amman

4

1 reference

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20 February 2020

author name string

Michael T Wolfinger

1

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Jörg Fallmann

2

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language of work or name

English

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publication date

20 February 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26236465%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

2 references

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20 February 2020

volume

4

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20 February 2020

page(s)

50

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Creative Commons Attribution 4.0 International

20 February 2020

copyright license

start time

20 July 2015

1 reference

April 2022 Public Data File from Crossref

Creative Commons Attribution 4.0 International

start time

20 February 2015

1 reference

April 2022 Public Data File from Crossref

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0 references

READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

TopHat: discovering splice junctions with RNA-Seq

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

The Bioperl toolkit: Perl modules for the life sciences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

The Sequence Alignment/Map format and SAMtools

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

TSSAR: TSS annotation regime for dRNA-seq data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

BEDTools: a flexible suite of utilities for comparing genomic features

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

HTSeq--a Python framework to work with high-throughput sequencing data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

General and MicroRNA-Mediated mRNA Degradation Occurs on Ribosome Complexes in Drosophila Cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser

27 September 2017

1 reference

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NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

BigWig and BigBed: enabling browsing of large distributed datasets

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

RNA-Seq gene expression estimation with read mapping uncertainty

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4513691

10.12688/F1000RESEARCH.6157.1

30 May 2018

Identifiers

DOI

1 reference

10.12688/F1000RESEARCH.6157.2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26236465%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26236465%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

26236465

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26236465%20AND%20SRC:MED&resulttype=core&format=json