Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation (Q22066386)

3

Hideki

Hirakawa

1 reference

7 February 2023

Haruyuki Nakayama

4

Haruyuki

Nakayama

1 reference

7 February 2023

Natsumi Okada

6

Natsumi

Okada

1 reference

7 February 2023

Satoru Kuhara

7

Satoru

Kuhara

1 reference

7 February 2023

Tetsuya Hayashi

9

Tetsuya

Hayashi

1 reference

7 February 2023

Yoshinari Ohnishi

10

Yoshinari

Proceedings of the National Academy of Sciences of the United States of America

Ohnishi

1 reference

7 February 2023

language of work or name

English

0 references

publication date

12 October 2004

0 references

published in

0 references

volume

101

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issue

41

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page(s)

14919-24

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cites work

Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

The COG database: new developments in phylogenetic classification of proteins from complete genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Consed: a graphical tool for sequence finishing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Base-calling of automated sequencer traces using phred. II. Error probabilities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

A Bacteroides thetaiotaomicron outer membrane protein that is essential for utilization of maltooligosaccharides and starch

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

CRITICA: coding region identification tool invoking comparative analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Asymmetric substitution patterns in the two DNA strands of bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Mpi recombinase globally modulates the surface architecture of a human commensal bacterium

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Genetic diversity of the capsular polysaccharide C biosynthesis region of Bacteroides fragilis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Bacteroides fragilis NCTC9343 produces at least three distinct capsular polysaccharides: cloning, characterization, and reassignment of polysaccharide B and C biosynthesis loci

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Shufflons: multiple inversion systems and integrons

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Shared themes of antigenic variation and virulence in bacterial, protozoal, and fungal infections.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Effect of regulatory protein levels on utilization of starch by Bacteroides thetaiotaomicron

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Characterization of a new type of Bacteroides conjugative transposon, Tcr Emr 7853.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Biochemical evidence that starch breakdown by Bacteroides thetaiotaomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Antigenic variation in Trypanosoma equiperdum

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Insertion and excision of Bacteroides conjugative chromosomal elements

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Bacteroides of the human lower intestinal tract

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Molecular mechanisms of Campylobacter fetus surface layer protein expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Mechanism of antigenic variation in Mycoplasma pulmonis: interwoven, site-specific DNA inversions

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Structural features of polysaccharides that induce intra-abdominal abscesses

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Interaction of two variable proteins (PilE and PilC) required for pilus-mediated adherence of Neisseria gonorrhoeae to human epithelial cells

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522005

Complete sequence of the Bacteroides fragilis YCH46 neuraminidase-encoding gene

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404172101

Multiple inverted DNA repeats of Bacteroides fragilis that control polysaccharide antigenic variation are similar to the hin region inverted repeats of Salmonella typhimurium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404172101

An automated system for genome analysis to support microbial whole-genome shotgun sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404172101

Extensive surface diversity of a commensal microorganism by multiple DNA inversions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0404172101

Physical and genetic map of the Bacteroides fragilis YCH46 chromosome

21 January 2018

1 reference

12 December 2020

The capsular polysaccharide of Bacteroides fragilis as a virulence factor: comparison of the pathogenic potential of encapsulated and unencapsulated strains

1 reference

12 December 2020

Virulence factors in infections with bacteroides fragilis: isolation and characterization of capsular polysaccharide and lipopolysaccharide

1 reference

12 December 2020

Epidemiology of the Bacteroides fragilis group in the colonic flora in 10 patients with colonic cancer

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0404172101

1 reference

release_rpfhmafj7baulepawcvsqx2psm

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rpfhmafj7baulepawcvsqx2psm

24 November 2022

mapped directly with Wikidata item

74390

1 reference

1 reference

1 reference