Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM (Q22066384)

ORCID Public Data File 2021

7 February 2023

13

Raul Cano

Raul

Cano

1 reference

7 February 2023

W Michael Russell

2

W Michael

Russell

1 reference

7 February 2023

M Andrea Azcarate-Peril

3

M Andrea

Azcarate-Peril

1 reference

7 February 2023

B Logan Buck

5

B Logan

Buck

1 reference

7 February 2023

Nicole Souther

7

Nicole

Souther

1 reference

7 February 2023

Alleson Dobson

8

Alleson

Dobson

1 reference

7 February 2023

Sonja Lick

11

Sonja

Lick

1 reference

7 February 2023

Alice Hamrick

12

Alice

Proceedings of the National Academy of Sciences of the United States of America

Hamrick

1 reference

7 February 2023

language of work or name

English

0 references

publication date

15 March 2005

0 references

published in

0 references

volume

102

0 references

page(s)

3906-12

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issue

11

0 references

cites work

The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Complete genome sequence of Lactobacillus plantarum WCFS1

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

The COG database: new developments in phylogenetic classification of proteins from complete genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

The KEGG resource for deciphering the genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Improved microbial gene identification with GLIMMER

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Invited review: the scientific basis of Lactobacillus acidophilus NCFM functionality as a probiotic

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Colonization and immunomodulation by Lactobacillus reuteri ATCC 55730 in the human gastrointestinal tract

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

GAMOLA: A New Local Solution for Sequence Annotation and Analyzing Draft and Finished Prokaryotic Genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Surviving the acid test: responses of gram-positive bacteria to low pH.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

New scientific paradigms for probiotics and prebiotics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Functional and comparative genomic analyses of an operon involved in fructooligosaccharide utilization by Lactobacillus acidophilus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Production of class II bacteriocins by lactic acid bacteria; an example of biological warfare and communication

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Comparative genomics of phages and prophages in lactic acid bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Discovering lactic acid bacteria by genomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Cloning of rel from Listeria monocytogenes as an osmotolerance involvement gene

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Identification of a novel family of sequence repeats among prokaryotes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

A high-molecular-mass cell-surface protein from Lactobacillus reuteri 1063 adheres to mucus components.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Identification and disruption of lisRK, a genetic locus encoding a two-component signal transduction system involved in stress tolerance and virulence in Listeria monocytogenes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Analysis of the intestinal microflora: a renaissance

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Cell surface-associated lipoteichoic acid acts as an adhesion factor for attachment of Lactobacillus johnsonii La1 to human enterocyte-like Caco-2 cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Identification and characterization of the eps (Exopolysaccharide) gene cluster from Streptococcus thermophilus Sfi6.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Plasmid addiction genes of bacteriophage P1: doc, which causes cell death on curing of prophage, and phd, which prevents host death when prophage is retained

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Factors involved in adherence of lactobacilli to human Caco-2 cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Manganese, superoxide dismutase, and oxygen tolerance in some lactic acid bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Identification and inactivation of genetic loci involved with Lactobacillus acidophilus acid tolerance

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Lipoteichoic acids from Lactobacillus johnsonii strain La1 and Lactobacillus acidophilus strain La10 antagonize the responsiveness of human intestinal epithelial HT29 cells to lipopolysaccharide and gram-negative bacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Adherence of Lactobacillus to intestinal 407 cells in culture correlates with fibronectin binding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Genetics of bacteriocins produced by lactic acid bacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Transposable elements in Lactococci: a review

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Multiple nutritional requirements of lactobacilli: genetic lesions affecting amino acid biosynthetic pathways.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

REPuter: fast computation of maximal repeats in complete genomes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Processing of the lactococcal extracellular serine proteinase

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=554803

Taxonomy of the Lactobacillus acidophilus Group

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409188102

Three views of microbial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409188102

Comparative study of nine Lactobacillus fermentum bacteriophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409188102

Identification of the pH-inducible, proton-translocating F1F0-ATPase (atpBEFHAGDC) operon of Lactobacillus acidophilus by differential display: gene structure, cloning and characterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409188102

csp-like genes of Lactobacillus delbrueckii ssp. bulgaricus and their response to cold shock.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409188102

Immunomodulation of human blood cells following the ingestion of lactic acid bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409188102

Identification and phenotypic characterization of the cell-division protein CdpA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0409188102

Superoxide dismutase activity in some strains of lactobacilli: induction by manganese

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15671160

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0409188102

1 reference

1236217

ADS bibcode

2005PNAS..102.3906A

0 references

1236217

1 reference

1 reference

1 reference