Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform (Q21563463)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

title

Exploring the mycobacteriophage metaproteome: phage genomics as an educational platform (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

0 references

20

William R Jr Jacobs

William R Jr

Jacobs

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

3

Deborah Jacobs-Sera

Deborah

Jacobs-Sera

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1

Graham F Hatfull

Graham F

Hatfull

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Marisa L Pedulla

2

Marisa L

Pedulla

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Pauline M Cichon

4

Pauline M

Cichon

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Amy Foley

5

Amy

Foley

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Michael E Ford

6

Michael E

Ford

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Rebecca M Gonda

7

Rebecca M

Gonda

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Jennifer M Houtz

8

Jennifer M

Houtz

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Andrew J Hryckowian

9

Andrew J

Hryckowian

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Vanessa A Kelchner

10

Vanessa A

Kelchner

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Swathi Namburi

11

Swathi

Namburi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Kostandin V Pajcini

12

Kostandin V

Pajcini

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Mark G Popovich

13

Mark G

Popovich

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Donald T Schleicher

14

Donald T

Schleicher

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Brian Z Simanek

15

Brian Z

Simanek

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Alexis L Smith

16

Alexis L

Smith

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Gina M Zdanowicz

17

Gina M

Zdanowicz

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Vanaja Kumar

18

Vanaja

Kumar

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Craig L Peebles

19

Craig L

Peebles

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Jeffrey G Lawrence

21

Jeffrey G

Lawrence

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Roger W Hendrix

22

Roger W

Hendrix

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

language of work or name

English

0 references

publication date

9 June 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

page(s)

e92

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

25 December 2019

copyright license

start time

9 June 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Genomic and genetic analysis of Bordetella bacteriophages encoding reverse transcriptase-mediated tropism-switching cassettes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

The COG database: an updated version includes eukaryotes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Genomic analysis of uncultured marine viral communities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

The Phage Proteomic Tree: a genome-based taxonomy for phage

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Bacteriophage control of bacterial virulence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Virioplankton: Viruses in Aquatic Ecosystems

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Lateral gene transfer and the nature of bacterial innovation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Improved microbial gene identification with GLIMMER

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Consed: a graphical tool for sequence finishing

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

A genomic perspective on protein families

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Origins of highly mosaic mycobacteriophage genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

SplitsTree: analyzing and visualizing evolutionary data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Comparative genomic analysis of 18 Pseudomonas aeruginosa bacteriophages

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Comparative genomics and evolution of the tailed-bacteriophages.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

The viriosphere, diversity, and genetic exchange within phage communities

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Survey of Undergraduate Research Experiences (SURE): first findings

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

12 September 2017

Bacteriophage genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Metagenomic analyses of an uncultured viral community from human feces

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Phage as agents of lateral gene transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Prophages and bacterial genomics: what have we learned so far?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

The diversity and evolution of the T4-type bacteriophages

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Bacteriophages: evolution of the majority

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Evolution of viral structure

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Expression of Mycobacteriophage Ms6 lysis genes is driven by two sigma(70)-like promoters and is dependent on a transcription termination signal present in the leader RNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Phage genomics: small is beautiful

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

12 September 2017

Phages of dairy bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Bacteriophage-bacteriophage interactions in the evolution of pathogenic bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

The origins and ongoing evolution of viruses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Evolution: the long evolutionary reach of viruses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Marine viruses and their biogeochemical and ecological effects

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

TB: the return of the phage. A review of fifty years of mycobacteriophage research

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Prevalence of broad-host-range lytic bacteriophages of Sphaerotilus natans, Escherichia coli, and Pseudomonas aeruginosa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Cholera: molecular basis for emergence and pathogenesis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Professional skills. The merits of training mentors

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Burkholderia cenocepacia phage BcepMu and a family of Mu-like phages encoding potential pathogenesis factors

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Diversity and population structure of a near-shore marine-sediment viral community.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Taxonomy of bacterial viruses: establishment of tailed virus genera and the order Caudovirales

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Recognition of genes in DNA sequence with ambiguities.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1475703

Length determination in bacteriophage lambda tails

29 November 2018

1 reference

12 December 2020

Mycobacteriophage TM4: genome structure and gene expression

1 reference

12 December 2020

Genome organization and characterization of mycobacteriophage Bxb1

1 reference

12 December 2020

Where are the pseudogenes in bacterial genomes?

1 reference

12 December 2020

Bacteriophages with tails: chasing their origins and evolution

1 reference

12 December 2020

Genome structure of mycobacteriophage D29: implications for phage evolution

1 reference

12 December 2020

Genome plasticity in the distal tail fiber locus of the T-even bacteriophage: recombination between conserved motifs swaps adhesin specificity

1 reference

12 December 2020

Viruses and Nutrient Cycles in the Sea

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.0020092

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PGEN.0020092

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16789831%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

PubMed publication ID

16789831

2 references