Subfunctionalization of duplicated zebrafish pax6 genes by cis-regulatory divergence (Q21145050)

10

object named as

Veronica van Heyningen

Veronica

van Heyningen

1 reference

17 August 2022

1

Dirk A Kleinjan

Dirk A

Kleinjan

1 reference

17 August 2022

3

Philippe Gautier

Philippe

Gautier

1 reference

17 August 2022

Ruth M Bancewicz

2

Ruth M

Bancewicz

1 reference

17 August 2022

Ralf Dahm

4

Ralf

Dahm

1 reference

17 August 2022

Helia B Schonthaler

5

Helia B

Schonthaler

1 reference

17 August 2022

Giuseppe Damante

6

Giuseppe

Damante

1 reference

17 August 2022

Anne Seawright

7

Anne

Seawright

1 reference

17 August 2022

Ann M Hever

8

Ann M

Hever

1 reference

17 August 2022

Patricia L Yeyati

9

Patricia L

Yeyati

1 reference

17 August 2022

Pedro Coutinho

11

Pedro

Creative Commons Attribution 4.0 International

Coutinho

1 reference

17 August 2022

language of work or name

English

0 references

publication date

February 2008

0 references

published in

PLOS Genetics

0 references

volume

4

0 references

issue

2

0 references

page(s)

e29

0 references

copyright license

start time

15 February 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Molecular dissection of Pax6 function: the specific roles of the paired domain and homeodomain in brain development

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A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

19 March 2017

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Characterization of a novel gene adjacent to PAX6, revealing synteny conservation with functional significance

19 March 2017

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Two independent and interactive DNA-binding subdomains of the Pax6 paired domain are regulated by alternative splicing

19 March 2017

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PAX6 gene dosage effect in a family with congenital cataracts, aniridia, anophthalmia and central nervous system defects

19 March 2017

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19 March 2017

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Analysis of Pax6 expression using a BAC transgene reveals the presence of a paired-less isoform of Pax6 in the eye and olfactory bulb

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Mouse limb deformity mutations disrupt a global control region within the large regulatory landscape required for Gremlin expression

19 March 2017

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Pax6 activity in the lens primordium is required for lens formation and for correct placement of a single retina in the eye

19 March 2017

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PipMaker--a web server for aligning two genomic DNA sequences

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Effective targeted gene 'knockdown' in zebrafish

7 April 2017

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In vivo enhancer analysis of human conserved non-coding sequences

7 April 2017

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Transcription regulation and animal diversity

7 April 2017

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Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos

7 April 2017

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Mouse small eye results from mutations in a paired-like homeobox-containing gene

7 April 2017

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Comparative genomics using Fugu reveals insights into regulatory subfunctionalization

7 April 2017

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Enhancer identification through comparative genomics

12 September 2017

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Controlled overexpression of Pax6 in vivo negatively autoregulates the Pax6 locus, causing cell-autonomous defects of late cortical progenitor proliferation with little effect on cortical arealization

12 September 2017

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Ancient noncoding elements conserved in the human genome

12 September 2017

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Long-range downstream enhancers are essential for Pax6 expression

12 September 2017

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Duplication events and the evolution of segmental identity

12 September 2017

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HoxD cluster scanning deletions identify multiple defects leading to paralysis in the mouse mutant Ironside

12 September 2017

1 reference

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Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences

12 September 2017

1 reference

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Genomic deletion of a long-range bone enhancer misregulates sclerostin in Van Buchem disease

12 September 2017

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Clues to function in gene deserts

12 September 2017

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Genome evolution and biodiversity in teleost fish

12 September 2017

1 reference

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Long-range control of gene expression: emerging mechanisms and disruption in disease

12 September 2017

1 reference

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Subfunction partitioning, the teleost radiation and the annotation of the human genome.

12 September 2017

1 reference

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Exploiting human--fish genome comparisons for deciphering gene regulation

12 September 2017

1 reference

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Functional properties of natural human PAX6 and PAX6(5a) mutants

12 September 2017

1 reference

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Loss of eyes in zebrafish caused by mutation of chokh/rx3.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

PAX6 in sensory development

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

National study of microphthalmia, anophthalmia, and coloboma (MAC) in Scotland: investigation of genetic aetiology

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Molecular characterization of Pax6(2Neu) through Pax6(10Neu): an extension of the Pax6 allelic series and the identification of two possible hypomorph alleles in the mouse Mus musculus.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

The transcription factor Pax6 is required for development of the diencephalic dorsal midline secretory radial glia that form the subcommissural organ.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

PAX6 haploinsufficiency causes cerebral malformation and olfactory dysfunction in humans.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Pax-6 and Cdx-2/3 interact to activate glucagon gene expression on the G1 control element

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Isolation and expression of a Pax-6 gene in the regenerating and intact Planarian Dugesia(G)tigrina.

12 September 2017

1 reference

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Zebrafish contains two pax6 genes involved in eye development

12 September 2017

1 reference

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Complete sequencing of the Fugu WAGR region from WT1 to PAX6: dramatic compaction and conservation of synteny with human chromosome 11p13.

12 September 2017

1 reference

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The reticulocalbin gene maps to the WAGR region in human and to the Small eye Harwell deletion in mouse

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Cooperative dimerization of paired class homeo domains on DNA.

12 September 2017

1 reference

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Identification and characterization of a neuroretina-specific enhancer element in the quail Pax-6 (Pax-QNR) gene

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Frequent chromosome aberrations revealed by molecular cytogenetic studies in patients with aniridia

12 September 2017

1 reference

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The upstream ectoderm enhancer in Pax6 has an important role in lens induction

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

A radiation hybrid map of the zebrafish genome.

27 September 2017

2 references

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27 September 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

A highly conserved lens transcriptional control element from the Pax-6 gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

A molecular code dictates sequence-specific DNA recognition by homeodomains.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Aniridia-associated cytogenetic rearrangements suggest that a position effect may cause the mutant phenotype

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Ancient duplicated conserved noncoding elements in vertebrates: a genomic and functional analysis

27 September 2017

1 reference

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Three novel Pax6 alleles in the mouse leading to the same small-eye phenotype caused by different consequences at target promoters

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

The zebrafish gene map defines ancestral vertebrate chromosomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

New 3' elements control Pax6 expression in the developing pretectum, neural retina and olfactory region.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Drosophila Pax-6/eyeless is essential for normal adult brain structure and function

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

High conservation of cis-regulatory elements between quail and human for the Pax-6 gene.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Genes involved in forebrain development in the zebrafish, Danio rerio.

30 May 2018

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Influence of PAX6 gene dosage on development: overexpression causes severe eye abnormalities.

30 May 2018

1 reference

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Multiple mechanisms of interference between transformation and differentiation in thyroid cells

30 May 2018

1 reference

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Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor

29 November 2018

1 reference

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A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.

29 November 2018

1 reference

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Identification and comparative expression analysis of a second wt1 gene in zebrafish.

29 November 2018

1 reference

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Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Evolutionary changes in cis and trans gene regulation

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Conditional inactivation of Pax6 in the pancreas causes early onset of diabetes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Inactivation of dispatched 1 by the chameleon mutation disrupts Hedgehog signalling in the zebrafish embryo

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Conserved elements in Pax6 intron 7 involved in (auto)regulation and alternative transcription.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

PAX6, paired domain influences sequence recognition by the homeodomain

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Novel ENU-induced eye mutations in the mouse: models for human eye disease

29 November 2018

1 reference

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Aniridia-associated translocations, DNase hypersensitivity, sequence comparison and transgenic analysis redefine the functional domain of PAX6.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Deletion of a coordinate regulator of type 2 cytokine expression in mice

29 November 2018

1 reference

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Threading analysis of prospero-type homeodomains.

29 November 2018

1 reference

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Tissue-specific transcriptional activity of a pancreatic islet cell-specific enhancer sequence/Pax6-binding site determined in normal adult tissues in vivo using transgenic mice.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Mutational analysis of PAX6: 16 novel mutations including 5 missense mutations with a mild aniridia phenotype.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Missense mutations in the most ancient residues of the PAX6 paired domain underlie a spectrum of human congenital eye malformations.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Distinct cis-essential modules direct the time-space pattern of the Pax6 gene activity.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Regulation of Pax6 expression is conserved between mice and flies.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242813

Genetic dissection of Pax6 dosage requirements in the developing mouse eye

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18282108

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conservation of RET regulatory function from human to zebrafish without sequence similarity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18282108

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evaluating the biological relevance of putative enhancers using Tol2 transposon-mediated transgenesis in zebrafish

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18282108

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.0040029

1 reference

218872

218872

1 reference

1 reference

1 reference