The iPlant Collaborative: Cyberinfrastructure for Plant Biology (Q21129222)

41

object named as

Alexandros Stamatakis

Alexandros

Stamatakis

1 reference

16 August 2022

52

James Leebens-Mack

James

Leebens-Mack

1 reference

16 August 2022

Naim Matasci

7

Naim

Matasci

1 reference

16 August 2022

Christos Noutsos

32

Christos

Noutsos

1 reference

16 August 2022

Karen A Cranston

44

Karen A

Cranston

1 reference

16 August 2022

Sheldon McKay

3

Sheldon

McKay

1 reference

16 August 2022

Rion Dooley

24

Rion

Dooley

1 reference

16 August 2022

Ann E Stapleton

5

Ann E

Stapleton

1 reference

16 August 2022

Matthew Vaughn

2

Matthew

Vaughn

1 reference

16 August 2022

Brian O'Meara

47

Brian

O'Meara

1 reference

16 August 2022

Todd J Vision

55

Todd J

Vision

1 reference

16 August 2022

Brian J Enquist

58

Brian J

Enquist

1 reference

16 August 2022

56

Christopher R Myers

Christopher R

Myers

1 reference

16 August 2022

Liya Wang

8

Liya

Wang

1 reference

16 August 2022

4

Eric Lyons

Eric

Lyons

1 reference

16 August 2022

59

Brad Boyle

Brad

Boyle

1 reference

16 August 2022

Edwin Skidmore

23

Edwin

Skidmore

1 reference

16 August 2022

Nirav Merchant

12

Nirav

Merchant

1 reference

16 August 2022

22

Chris

Jordan

Chris Jordan

1 reference

16 August 2022

46

Doug

Soltis

Doug Soltis

1 reference

16 August 2022

53

Michael J

Donoghue

Michael J Donoghue

1 reference

16 August 2022

Stephen A Goff

1

Stephen A

Goff

1 reference

16 August 2022

Damian Gessler

6

Damian

Gessler

1 reference

16 August 2022

Matthew Hanlon

9

Matthew

Hanlon

1 reference

16 August 2022

Andrew Lenards

10

Andrew

Lenards

1 reference

16 August 2022

Andy Muir

11

Andy

Muir

1 reference

16 August 2022

Sonya Lowry

13

Sonya

Lowry

1 reference

16 August 2022

Stephen Mock

14

Stephen

Mock

1 reference

16 August 2022

Matthew Helmke

15

Matthew

Helmke

1 reference

16 August 2022

Adam Kubach

16

Adam

Kubach

1 reference

16 August 2022

Martha Narro

17

Martha

Narro

1 reference

16 August 2022

Nicole Hopkins

18

Nicole

Hopkins

1 reference

16 August 2022

David Micklos

19

David

Micklos

1 reference

16 August 2022

Uwe Hilgert

20

Uwe

Hilgert

1 reference

16 August 2022

Michael Gonzales

21

Michael

Gonzales

1 reference

16 August 2022

John Cazes

25

John

Cazes

1 reference

16 August 2022

Robert McLay

26

Robert

McLay

1 reference

16 August 2022

Zhenyuan Lu

27

Zhenyuan

Lu

1 reference

16 August 2022

Shiran Pasternak

28

Shiran

Pasternak

1 reference

16 August 2022

Lars Koesterke

29

Lars

Koesterke

1 reference

16 August 2022

William H Piel

30

William H

Piel

1 reference

16 August 2022

Ruth Grene

31

Ruth

Grene

1 reference

16 August 2022

Karla Gendler

33

Karla

Gendler

1 reference

16 August 2022

Xin Feng

34

Xin

Feng

1 reference

16 August 2022

Chunlao Tang

35

Chunlao

Tang

1 reference

16 August 2022

Monica Lent

36

Monica

Lent

1 reference

16 August 2022

Seung-Jin Kim

37

Seung-Jin

Kim

1 reference

16 August 2022

Kristian Kvilekval

38

Kristian

Kvilekval

1 reference

16 August 2022

B S Manjunath

39

B S

Manjunath

1 reference

16 August 2022

Val Tannen

40

Val

Tannen

1 reference

16 August 2022

Michael Sanderson

42

Michael

Sanderson

1 reference

16 August 2022

Stephen M Welch

43

Stephen M

Welch

1 reference

16 August 2022

Cecile Ane

48

Cecile

Ane

1 reference

16 August 2022

Tom Brutnell

49

Tom

Brutnell

1 reference

16 August 2022

Daniel J Kleibenstein

50

Daniel J

Kleibenstein

1 reference

16 August 2022

Jeffery W White

51

Jeffery W

White

1 reference

16 August 2022

Edgar P Spalding

54

Edgar P

Spalding

1 reference

16 August 2022

David Lowenthal

57

David

Lowenthal

1 reference

16 August 2022

Ali Akoglu

60

Ali

Akoglu

1 reference

16 August 2022

Greg Andrews

61

Greg

Andrews

1 reference

16 August 2022

Sudha Ram

62

Sudha

Ram

1 reference

16 August 2022

Doreen Ware

63

Doreen

Ware

1 reference

16 August 2022

Dan Stanzione

65

Dan

Frontiers in Plant Science

Stanzione

1 reference

16 August 2022

language of work or name

English

0 references

publication date

2011

0 references

published in

1 reference

The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

Crossref

volume

2

0 references

page(s)

34

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

A DNA barcode for land plants

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Phylogenetic patterns of species loss in Thoreau's woods are driven by climate change

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

A phyloclimatic study of Cyclamen

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

NCEAS: promoting creative collaborations

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Biological identifications through DNA barcodes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

BLAT—The BLAST-Like Alignment Tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

The neighbor-joining method: a new method for reconstructing phylogenetic trees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

The Sequence Alignment/Map format and SAMtools

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

A rapid bootstrap algorithm for the RAxML Web servers

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Integrating ARC grid middleware with Taverna workflows

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

BioMoby extensions to the Taverna workflow management and enactment software

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Taverna: a tool for building and running workflows of services

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Taverna: a tool for the composition and enactment of bioinformatics workflows

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Towards BioDBcore: a community-defined information specification for biological databases

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

APE: Analyses of Phylogenetics and Evolution in R language

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Understanding angiosperm diversification using small and large phylogenetic trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

PeakRanger: a cloud-enabled peak caller for ChIP-seq data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Screening synteny blocks in pairwise genome comparisons through integer programming

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Biology and data-intensive scientific discovery in the beginning of the 21st century

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Controlling for non-independence in comparative analysis of patterns across populations within species

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Journey through the past: 150 million years of plant genome evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Using genomic sequencing for classical genetics in E. coli K12.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Consequences of climate change on the tree of life in Europe

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Names are key to the big new biology.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Text mining meets workflow: linking U-Compare with Taverna

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Insights from the comparison of plant genome sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Research on plant abiotic stress responses in the post-genome era: past, present and future

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Evolutionary biology in biodiversity science, conservation, and policy: a call to action

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Plant genome sequencing: applications for crop improvement

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Bioinformatics in the orphan crops

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Using R in Taverna: RShell v1.2.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Computer vision as a tool to study plant development

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Threatened species and the potential loss of phylogenetic diversity: conservation scenarios based on estimated extinction probabilities and phylogenetic risk analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Phyloclimatic modeling: combining phylogenetics and bioclimatic modeling.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Bisque: a platform for bioimage analysis and management

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Convergence and correlations among leaf size and function in seed plants: a comparative test using independent contrasts

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

HYPOTrace: image analysis software for measuring hypocotyl growth and shape demonstrated on Arabidopsis seedlings undergoing photomorphogenesis.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Comparative methods with sampling error and within-species variation: contrasts revisited and revised

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

The Taverna Interaction Service: enabling manual interaction in workflows.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

Computer-vision analysis of seedling responses to light and gravity.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3355756

The inside view on plant growth

29 November 2018

1 reference

12 December 2020

The plant genome: an evolutionary perspective on structure and function

1 reference

12 December 2020

Non-orthologous gene displacement

1 reference

12 December 2020

From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture

1 reference

12 December 2020

Opinion piece: genomics and crop plant science in Europe

1 reference

12 December 2020

Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture

1 reference

12 December 2020

Identifiers

DOI

10.3389/FPLS.2011.00034

1 reference

719979

719979

1 reference

1 reference

1 reference