Simultaneous Bayesian gene tree reconstruction and reconciliation analysis (Q28754785)

22 June 2017

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis (English)

1 reference

phylogenetic reconciliation

22 June 2017

1 reference

2

Bengt Sennblad

1 reference

22 June 2017

Lars Arvestad

3

0 references

Jens Lagergren

series ordinal

4

object named as

Jens Lagergren

1 reference

22 June 2017

Orjan Akerborg

1

1 reference

PubMed ID

19299507

22 June 2017

language of work or name

English

0 references

publication date

19 March 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

22 June 2017

1 reference

22 June 2017

106

1 reference

22 June 2017

5714-5719

1 reference

22 June 2017

14

1 reference

Birth-death prior on phylogeny and speed dating

22 June 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Relaxed phylogenetics and dating with confidence

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Resurrecting ancestral alcohol dehydrogenases from yeast

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

The modern molecular clock

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Birth and death of protein domains: a simple model of evolution explains power law behavior

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

MRBAYES: Bayesian inference of phylogenetic trees

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

The evolutionary fate and consequences of duplicate genes

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

A compound poisson process for relaxing the molecular clock

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Evolutionary trees from DNA sequences: A maximum likelihood approach

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

The rapid generation of mutation data matrices from protein sequences

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

The origins of genome complexity

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Divergence time and evolutionary rate estimation with multilocus data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Estimating the rate of evolution of the rate of molecular evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Inferring phylogeny despite incomplete lineage sorting

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Performance of a divergence time estimation method under a probabilistic model of rate evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

A general comparison of relaxed molecular clock models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Inferring speciation times under an episodic molecular clock

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Natural history and evolutionary principles of gene duplication in fungi.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Estimating the tempo and mode of gene family evolution from comparative genomic data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Comprehensive analysis of orthologous protein domains using the HOPS database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Estimation of synteny conservation and genome compaction between pufferfish (Fugu) and human

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Evolution by the birth-and-death process in multigene families of the vertebrate immune system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Maps between Trees and Cladistic Analysis of Historical Associations Among Genes, Organisms, and Areas

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

Towards detection of orthologues in sequence databases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

Quantitative Phyletics and the Evolution of Anurans

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

Automatic genome-wide reconstruction of phylogenetic gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

The oldest fossil ascomycetes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

Significantly different patterns of amino acid replacement after gene duplication as compared to after speciation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0806251106

Gene tree distributions under the coalescent process

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Vertebrate phylogenomics: reconciled trees and gene duplications.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2667006

Phylogenetic relationships among yeasts of the ? complex? determined from multigene sequence analyses

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19299507

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0806251106

1 reference

OpenCitations bibliographic resource ID

22 June 2017

0 references

4001911

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

PubMed ID

19299507