Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods (Q101222106)

From Wikidata

Jump to navigation Jump to search

scientific article published on 04 November 2020

Language	Label	Description	Also known as
English	Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods	scientific article published on 04 November 2020

Statements

scholarly article

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

machine learning

0 references

Sanni Voutilainen

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

11

object named as

Juho Rousu

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

10

object named as

Samuel Kaski

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

author name string

Markus Heinonen

2

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Martina Andberg

3

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Emmi Jokinen

4

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Hannu Maaheimo

5

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Johan Pääkkönen

6

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Nina Hakulinen

7

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Juha Rouvinen

8

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Harri Lähdesmäki

9

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Merja Penttilä

12

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Anu Koivula

13

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

publication date

4 November 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Applied Microbiology and Biotechnology

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Phasercrystallographic software

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Towards automated crystallographic structure refinement with phenix.refine

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Probing the acetaldehyde-sensitivity of 2-deoxy-ribose-5-phosphate aldolase (DERA) leads to resistant variants.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Reducing codon redundancy and screening effort of combinatorial protein libraries created by saturation mutagenesis.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

The first crystal structure of archaeal aldolase. Unique tetrameric structure of 2-deoxy-d-ribose-5-phosphate aldolase from the hyperthermophilic archaea Aeropyrum pernix

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Enzymatic assembly of DNA molecules up to several hundred kilobases

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

MolProbity: all-atom structure validation for macromolecular crystallography

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Computational Enzyme Design: Advances, hurdles and possible ways forward

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Nucleophile Promiscuity of Natural and Engineered Aldolases.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Polder maps: improving OMIT maps by excluding bulk solvent.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Computational enzyme design: transitioning from catalytic proteins to enzymes

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

A highly productive, whole-cell DERA chemoenzymatic process for production of key lactonized side-chain intermediates in statin synthesis

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

2-Deoxy-D-ribose-5-phosphate aldolase (DERA): applications and modifications

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Conformational Sampling of the Intrinsically Disordered C-Terminal Tail of DERA Is Important for Enzyme Catalysis

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Analysis of the class I aldolase binding site architecture based on the crystal structure of 2-deoxyribose-5-phosphate aldolase at 0.99A resolution

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Computational enzyme design

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Features and development of Coot

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Directed evolution of an industrial biocatalyst: 2-deoxy-D-ribose 5-phosphate aldolase.

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

PHENIX: a comprehensive Python-based system for macromolecular structure solution

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Exploring the challenges of computational enzyme design by rebuilding the active site of a dehalogenase

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Mechanism-based inhibition of an aldolase at high concentrations of its natural substrate acetaldehyde: structural insights and protective strategies

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Observation of covalent intermediates in an enzyme mechanism at atomic resolution

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Klebsiella pneumoniae 1,3-propanediol:NAD+ oxidoreductase

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

2-Deoxyribose-5-phosphate aldolase, a remarkably tolerant aldolase towards nucleophile substrates

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

T7 vectors with modified T7lac promoter for expression of proteins in Escherichia coli

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1007/S00253-020-10960-X

3 May 2022

Identifiers

10.1007/S00253-020-10960-X

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33147349%20AND%20SRC:MED&resulttype=core&format=json

6 November 2020

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q101222106&oldid=1977067327"