Wikidata:WikiProject Gene Wiki

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GeneWikidata-logo-en.png
Welcome to WikiProject Gene Wiki
This is a WikiProject dedicated to make and maintiain Wikidata as a central hub of linked knowledge on Genes, Proteins, Diseases, Drugs, and related concepts.

The team[edit]

Past participants / operators[edit]

Bot accounts[edit]

Our team runs or helps to run the following bot accounts:

Basic Network View[edit]

Network of the current status of the ProteinBoxBot wikidata project


Detailed Network View[edit]

A class-level diagram depicting the core biomedical knowledge network in Wikidata. Every box represents one entity type, which is noted in the box header with the number of Wikidata items of that class. The attributes listed in the box are Wikidata properties (and property counts) for each entity type. Properties that link to other Wikidata items are depicted as edges in the graph. The core entity types that were loaded by our team are shown in orange. Data for human genetic variants and biological pathways are being loaded by other research groups, but in coordination with our team and using our Python library (purple boxes). A team from NIOSH has loaded data on chemical hazards and environmental exposures, and a separate team of researchers is loading bibliographic data for the scientific literature (green boxes).

How to cite us[edit]

Publications, presentations [edit]

Type Title / link Date Presenter Venue
Publication Wikidata as a semantic framework for the Gene Wiki initiative (Q23712646) Link 2016-03-17
Publication Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (Q21503281) Link 2016-03-28 User:Putmantime
Presentation Leveraging Wikidata for crowd curation 2016-04-12 User:Andrawaag  Biocuration 2016
Presentation Wikidata as a platform for biocuration 2016-04-13 User:i9606  Biocuration 2016
Talk/Poster Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes (talk) (poster) 2016-04-17 User:Putmantime Force 2016, Biocuration 2016
Presentation Opportunities and challenges presented by Wikidata in the context of biocuration 2016-08-01 User:i9606 ICBO/BioCreative 2016
Publication WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata. 2017-01-24
Presentation Using WikiData as an interoperable data hub for life science data 2017-03-23
Presentation WikiGenomes: an open Web application for community consumption and curation of gene annotation data in Wikidata. 2017-03-27
Poster Applications for Modeling Life Science data in Wikidata. 2017-03-27
Presentation Wikidata for biomedical knowledge integration and curation 2017-04-24 User:Gstupp BD2K
Presentation Using Wikidata as an open, community-maintained database of biomedical knowledge 2017-07-22 User:Andrew Su BOSC 2017
Presentation Wikidata and biomedical information 2017-08-10
Presentation Wikidata for biomedical knowledge integration and curation (Link) 2018-01-17 User:Gstupp PAG 2018

Presentation Archive