ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity (Q92579804)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

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Christelle Hennequet-Antier

series ordinal

3

object named as

Christelle Hennequet-Antier

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1

Aurélien Brionne

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

author name string

Amélie Juanchich

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

publication date

6 August 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

volume

12

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30 April 2020

page(s)

16

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describes a project that uses

30 April 2020

edgeR

object named as

edgeR

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Functional genomics of the digestive tract in broilers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

GOGO: An improved algorithm to measure the semantic similarity between gene ontology terms

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

A multi-scale analysis of bull sperm methylome revealed both species peculiarities and conserved tissue-specific features.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Expansion of the Gene Ontology knowledgebase and resources

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

g:Profiler-a web server for functional interpretation of gene lists (2016 update)

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

EGF-mediated induction of Mcl-1 at the switch to lactation is essential for alveolar cell survival

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

The GOA database: gene Ontology annotation updates for 2015

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Information content-based gene ontology semantic similarity approaches: toward a unified framework theory

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

clusterProfiler: an R package for comparing biological themes among gene clusters.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

REVIGO summarizes and visualizes long lists of gene ontology terms

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Metrics for GO based protein semantic similarity: a systematic evaluation

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

A new method to measure the semantic similarity of GO terms

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Enrichment or depletion of a GO category within a class of genes: which test?

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

A new measure for functional similarity of gene products based on Gene Ontology

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

Gene ontology: tool for the unification of biology

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6685253

10.1186/S13040-019-0204-1

11 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

journals/biodatamining/BrionneJH19

30 April 2020

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31406507%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference