Fully Bayesian analysis of RNA-seq counts for the detection of gene expression heterosis (Q92236256)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31354180%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

title

Fully Bayesian analysis of RNA-seq counts for the detection of gene expression heterosis (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31354180%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

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28 April 2020

author name string

Jarad Niemi

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31354180%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

Dan Nettleton

series ordinal

3

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28 April 2020

publication date

13 November 2018

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Journal of the American Statistical Association

28 April 2020

published in

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28 April 2020

volume

114

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28 April 2020

issue

526

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28 April 2020

page(s)

610-621

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Approximate inference of gene regulatory network models from RNA-Seq time series data.

28 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

A Semi-parametric Bayesian Approach for Differential Expression Analysis of RNA-seq Data

23 February 2021

1 reference

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Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Hierarchical Modeling and Differential Expression Analysis for RNA-seq Experiments with Inbred and Hybrid Genotypes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Estimation and Testing of Gene Expression Heterosis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs

23 February 2021

1 reference

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Dispersion estimation and its effect on test performance in RNA-seq data analysis: a simulation-based comparison of methods

23 February 2021

1 reference

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An optimal test with maximum average power while controlling FDR with application to RNA-seq data

23 February 2021

1 reference

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EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents

23 February 2021

1 reference

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A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

From RNA-seq reads to differential expression results

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Differential expression analysis for sequence count data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

A scaling normalization method for differential expression analysis of RNA-seq data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Exploring plant transcriptomes using ultra high-throughput sequencing

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

The B73 Maize Genome: Complexity, Diversity, and Dynamics

23 February 2021

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The BUGS project: Evolution, critique and future directions

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Allelic variation and heterosis in maize: how do two halves make more than a whole?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Heterosis: revisiting the magic

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Manifestation of heterosis during early maize (Zea mays L.) root development

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6660196

10.1080/01621459.2018.1497496

23 February 2021

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31354180%20AND%20SRC:MED&resulttype=core&format=json

28 April 2020

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28 April 2020

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