PubTator central: automated concept annotation for biomedical full text articles (Q92202965)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

title

PubTator central: automated concept annotation for biomedical full text articles (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1

Chih-Hsuan Wei

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

4

Zhiyong Lu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

2

Alexis Allot

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

3

Robert Leaman

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

language of work or name

English

0 references

publication date

1 July 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

volume

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

issue

W1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

page(s)

W587-W593

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

PMC text mining subset in BioC: about three million full-text articles and growing

27 April 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed records

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Configurable web-services for biomedical document annotation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Thalia: Semantic search engine for biomedical abstracts

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

LION LBD: a Literature-Based Discovery System for Cancer Biology

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Scaling up data curation using deep learning: An application to literature triage in genomic variation resources

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

The Cellosaurus, a cell-line knowledge resource

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

A global network of biomedical relationships derived from text.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

12 years on - Is the NLM medical text indexer still useful and relevant?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

BEST: Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical Literature

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

A PubMed-wide study of endometriosis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

HiPub: translating PubMed and PMC texts to networks for knowledge discovery

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

TaggerOne: joint named entity recognition and normalization with semi-Markov Models

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

BioCreative V CDR task corpus: a resource for chemical disease relation extraction

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

DiMeX: A Text Mining System for Mutation-Disease Association Extraction.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

SimConcept: a hybrid approach for simplifying composite named entities in biomedical text

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

The CHEMDNER corpus of chemicals and drugs and its annotation principles

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

A Proteomic Study of Human Merkel Cell Carcinoma

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Literature mining of genetic variants for curation: quantifying the importance of supplementary material

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

NCBI disease corpus: a resource for disease name recognition and concept normalization

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

BioC: a minimalist approach to interoperability for biomedical text processing

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

DNorm: disease name normalization with pairwise learning to rank

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

PubTator: a web-based text mining tool for assisting biocuration

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

tmVar: a text mining approach for extracting sequence variants in biomedical literature

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

GeneView: a comprehensive semantic search engine for PubMed

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

SR4GN: a species recognition software tool for gene normalization

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Text mining for the biocuration workflow

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Argo: an integrative, interactive, text mining-based workbench supporting curation

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Cross-species gene normalization by species inference

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

The structural and content aspects of abstracts versus bodies of full text journal articles are different

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

LINNAEUS: a species name identification system for biomedical literature

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Is searching full text more effective than searching abstracts?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Overview of BioCreative II gene normalization

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

Abbreviation definition identification based on automatic precision estimates

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6602571

23 February 2021

Identifiers

DOI

10.1093/NAR/GKZ389

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31114887%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

PubMed publication ID

31114887

1 reference