Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis (Q90565414)

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Human Cell Atlas Publications

14 April 2020

part of

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24 December 2020

title

Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis (English)

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14 April 2020

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single cell transcriptomics

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A curated database reveals trends in single-cell transcriptomics

7 February 2021

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Ramiro Fernandez

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publication date

1 June 2019

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external data available at URL

14 April 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE122960

1 reference

A curated database reveals trends in single-cell transcriptomics

American Journal of Respiratory and Critical Care Medicine

7 February 2021

published in

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14 April 2020

volume

199

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14 April 2020

page(s)

1517-1536

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14 April 2020

issue

12

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describes a project that uses

14 April 2020

lung

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

10x Genomics Chromium

1 reference

A curated database reveals trends in single-cell transcriptomics

Gene ontology: tool for the unification of biology

7 February 2021

cites work

1 reference

12 December 2020

Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis

1 reference

12 December 2020

Gene expression profiles distinguish idiopathic pulmonary fibrosis from hypersensitivity pneumonitis

1 reference

12 December 2020

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 reference

12 December 2020

Discovering motifs in ranked lists of DNA sequences

1 reference

12 December 2020

Identification of stem cells in small intestine and colon by marker gene Lgr5

1 reference

12 December 2020

Resident cellular components of the human lung: current knowledge and goals for research on cell phenotyping and function.

1 reference

12 December 2020

The Immunological Genome Project: networks of gene expression in immune cells.

1 reference

12 December 2020

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

1 reference

12 December 2020

Gene expression profiles of acute exacerbations of idiopathic pulmonary fibrosis

1 reference

12 December 2020

Basal cells as stem cells of the mouse trachea and human airway epithelium

1 reference

12 December 2020

HTII-280, a biomarker specific to the apical plasma membrane of human lung alveolar type II cells

1 reference

12 December 2020

Integrating mechanisms of pulmonary fibrosis

1 reference

12 December 2020

Osteopontin in systemic sclerosis and its role in dermal fibrosis

1 reference

12 December 2020

Idiopathic pulmonary fibrosis: current challenges and future perspectives.

1 reference

12 December 2020

Reversal of persistent fibrosis in aging by targeting Nox4-Nrf2 redox imbalance

1 reference

12 December 2020

Chitinase 3-like 1 suppresses injury and promotes fibroproliferative responses in Mammalian lung fibrosis

1 reference

12 December 2020

Wnt coreceptor Lrp5 is a driver of idiopathic pulmonary fibrosis

1 reference

12 December 2020

A novel genomic signature with translational significance for human idiopathic pulmonary fibrosis

1 reference

12 December 2020

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

1 reference

12 December 2020

Proteomics. Tissue-based map of the human proteome

1 reference

12 December 2020

Health care utilization and costs of idiopathic pulmonary fibrosis in U.S. Medicare beneficiaries aged 65 years and older.

1 reference

12 December 2020

Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

1 reference

12 December 2020

Global incidence and mortality of idiopathic pulmonary fibrosis: a systematic review.

1 reference

12 December 2020

A Bronchial Genomic Classifier for the Diagnostic Evaluation of Lung Cancer

1 reference

12 December 2020

Classification of usual interstitial pneumonia in patients with interstitial lung disease: assessment of a machine learning approach using high-dimensional transcriptional data

1 reference

12 December 2020

Cellular senescence-like features of lung fibroblasts derived from idiopathic pulmonary fibrosis patients.

1 reference

12 December 2020

Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors

1 reference

12 December 2020

Transbronchial cryobiopsy in diffuse parenchymal lung diseases

1 reference

12 December 2020

An American Thoracic Society Official Research Statement: Future Directions in Lung Fibrosis Research

1 reference

12 December 2020

Integrated Genomics Reveals Convergent Transcriptomic Networks Underlying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis

1 reference

12 December 2020

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

1 reference

12 December 2020

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons

1 reference

12 December 2020

mTORC1 activation decreases autophagy in aging and idiopathic pulmonary fibrosis and contributes to apoptosis resistance in IPF fibroblasts.

1 reference

12 December 2020

The Comparative Toxicogenomics Database: update 2017

1 reference

12 December 2020

Expansion of the Gene Ontology knowledgebase and resources

1 reference

12 December 2020

The diagnosis of idiopathic pulmonary fibrosis: current and future approaches

1 reference

12 December 2020

Cellular Senescence and Lung Function during Aging. Yin and Yang

1 reference

12 December 2020

Massively parallel digital transcriptional profiling of single cells

1 reference

12 December 2020

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

1 reference

12 December 2020

Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem-cell self-renewal

1 reference

12 December 2020

Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span.

1 reference

12 December 2020

LungMAP: The Molecular Atlas of Lung Development Program.

1 reference

12 December 2020

Unmasking Transcriptional Heterogeneity in Senescent Cells

1 reference

12 December 2020

Massively parallel single-nucleus RNA-seq with DroNc-seq

1 reference

12 December 2020

Deletion of c-FLIP from CD11b(hi) Macrophages Prevents Development of Bleomycin-induced Lung Fibrosis.

1 reference

12 December 2020

Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.

1 reference

12 December 2020

1 reference

12 December 2020

Automated cell-type classification in intact tissues by single-cell molecular profiling.

1 reference

12 December 2020

Transcriptomic evidence of immune activation in macroscopically normal-appearing and scarred lung tissues in idiopathic pulmonary fibrosis.

1 reference

12 December 2020

Time for a change: is idiopathic pulmonary fibrosis still idiopathic and only fibrotic?

1 reference

12 December 2020

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells.

1 reference

12 December 2020

Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH.

1 reference

12 December 2020

Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor.

1 reference

12 December 2020

Idiopathic Pulmonary Fibrosis

1 reference

12 December 2020

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes

1 reference

12 December 2020

10.1164/RCCM.201712-2410OC

Identifiers

DOI

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