Computational investigation of the histidine ammonia-lyase reaction: a modified loop conformation and the role of the zinc(II) ion (Q85158318)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

title

Computational investigation of the histidine ammonia-lyase reaction: a modified loop conformation and the role of the zinc(II) ion (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

author name string

Amalia-Laura Seff

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Sarolta Pilbák

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Ioan Silaghi-Dumitrescu

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

publication date

5 October 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

Journal of Molecular Modeling

15 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

issue

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

page(s)

1551-1563

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20922445%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1007/s00894-010-0849-7

15 February 2020

exact match

0 references

cites work

Use of nitrogen-15 and deuterium isotope effects to determine the chemical mechanism of phenylalanine ammonia-lyase

1 reference

12 December 2020

The structure of L-tyrosine 2,3-aminomutase from the C-1027 enediyne antitumor antibiotic biosynthetic pathway

1 reference

12 December 2020

Purification and characterization of Pseudomonas putida histidine ammonia-lyase expressed in Escherichia coli

1 reference

12 December 2020

Histidine ammonia-lyase. The use of 4-fluorohistidine in identification of the rate-determining step

1 reference

12 December 2020

Discovery of Two Cyanobacterial Phenylalanine Ammonia Lyases: Kinetic and Structural Characterization † , ‡

1 reference

12 December 2020

Characterization of the active site of histidine ammonia-lyase from Pseudomonas putida

1 reference

12 December 2020

A novel 4-methylideneimidazole-5-one-containing tyrosine aminomutase in enediyne antitumor antibiotic C-1027 biosynthesis

1 reference

12 December 2020

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

1 reference

12 December 2020

Identification of the mutation in murine histidinemia (his) and genetic mapping of the murine histidase locus (Hal) on chromosome 10

1 reference

12 December 2020

Structural basis of the zinc inhibition of human tissue kallikrein 5

1 reference

12 December 2020

Cloning, heterologous expression, and characterization of a phenylalanine aminomutase involved in Taxol biosynthesis

1 reference

12 December 2020

Stereospecific irreversible inhibition of histidine ammonia-lyase by L-cysteine

1 reference

12 December 2020

Crystal structures of human ADAMTS-1 reveal a conserved catalytic domain and a disintegrin-like domain with a fold homologous to cysteine-rich domains

1 reference

12 December 2020

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models

1 reference

12 December 2020

Coordination geometries of selected transition metal ions (Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+) in metalloproteins

1 reference

12 December 2020

Studies on the Mechanism of Action and the Structure of the Electrophilic Center of Histidine Ammonia Lyase

1 reference

12 December 2020

Metal activation of histidine ammonia-lyase. Metal ion-sulfhydryl group relationship

1 reference

12 December 2020

Methylidene-imidazolone: a novel electrophile for substrate activation

1 reference

12 December 2020

Crystal structure of phenylalanine ammonia lyase: multiple helix dipoles implicated in catalysis

1 reference

12 December 2020

4-Nitro-L-histidine as a substrate for histidine ammonia-lyase: The role of β-hydrogen acidity in the rate-limiting step

1 reference

12 December 2020

Structure-based chemical modification strategy for enzyme replacement treatment of phenylketonuria

1 reference

12 December 2020

Localization of histidase to human chromosome region 12q22----q24.1 and mouse chromosome region 10C2----D1

1 reference

12 December 2020

Crystal structure of histidine ammonia-lyase revealing a novel polypeptide modification as the catalytic electrophile

1 reference

12 December 2020

A single residue influences the reaction mechanism of ammonia lyases and mutases

1 reference

12 December 2020

Identification of Ser143 as the site of modification in the active site of histidine ammonia-lyase

1 reference

12 December 2020

A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land

1 reference

12 December 2020

Metallo-beta-lactamases (classification, activity, genetic organization, structure, zinc coordination) and their superfamily

1 reference

12 December 2020

Carbonic anhydrase. Its preparation and properties

1 reference

12 December 2020

Data mining of metal ion environments present in protein structures

1 reference

12 December 2020

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

1 reference

12 December 2020

Site-directed mutagenesis of conserved serines in rat histidase. Identification of serine 254 as an essential active site residue

1 reference

12 December 2020

Contributions of conserved serine and tyrosine residues to catalysis, ligand binding, and cofactor processing in the active site of tyrosine ammonia lyase

1 reference

12 December 2020

Discovery and role of methylidene imidazolone, a highly electrophilic prosthetic group

1 reference

12 December 2020

Autocatalytic peptide cyclization during chain folding of histidine ammonia-lyase

1 reference

12 December 2020

Structural and Biochemical Characterization of the Therapeutic Anabaena variabilis Phenylalanine Ammonia Lyase

1 reference

12 December 2020

Structural Aspects of Metal Liganding to Functional Groups in Proteins

1 reference

12 December 2020

A semiempirical free energy force field with charge-based desolvation

1 reference

12 December 2020

Unusual mechanism for an aminomutase rearrangement: retention of configuration at the migration termini.

1 reference

12 December 2020

Structural insights into the design of inhibitors for the L1 metallo-beta-lactamase from Stenotrophomonas maltophilia

1 reference

12 December 2020

Cloning and sequencing the urocanase gene (hutU) fromPseudomonas putida

1 reference

12 December 2020

Presence and quantity of dehydroalanine in histidine ammonia-lyase from Pseudomonas putida

1 reference

12 December 2020

First structure of a snake venom metalloproteinase: a prototype for matrix metalloproteinases/collagenases

1 reference

12 December 2020

Friedel-Crafts-type mechanism for the enzymatic elimination of ammonia from histidine and phenylalanine.

1 reference

12 December 2020

Spectroscopic Evidence for a 4-Methylidene Imidazol-5-one in Histidine and Phenylalanine Ammonia-Lyases We thank Prof. G. E. Schulz and Dipl.-Chem. M. Baedeker (University of Freiburg) for providing us with the new PAL expression system and Dr. M. S

1 reference

12 December 2020

Design and characterization of mechanism-based inhibitors for the tyrosine aminomutase SgTAM

1 reference

12 December 2020

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

1 reference

12 December 2020

A wavelength effect on urocanic acid E/Z photoisomerization

1 reference

12 December 2020

The essential tyrosine-containing loop conformation and the role of the C-terminal multi-helix region in eukaryotic phenylalanine ammonia-lyases

1 reference

12 December 2020

Cloning and nucleotide sequences of histidase and regulatory genes in the Bacillus subtilis hut operon and positive regulation of the operon

1 reference

12 December 2020

The mechanism of MIO-based aminomutases in beta-amino acid biosynthesis.

1 reference

12 December 2020

The mechanism of action of histidase: amino-enzyme formation and partial reactions

1 reference

12 December 2020

Cloning and expression of rat histidase. Homology to two bacterial histidases and four phenylalanine ammonia-lyases

1 reference

12 December 2020

An active site homology model of phenylalanine ammonia-lyase from Petroselinum crispum.

1 reference

12 December 2020

Structural Determinants and Modulation of Substrate Specificity in Phenylalanine-Tyrosine Ammonia-Lyases

1 reference

12 December 2020

Structural basis for the entrance into the phenylpropanoid metabolism catalyzed by phenylalanine ammonia-lyase

1 reference

12 December 2020

SWISS-MODEL: An automated protein homology-modeling server

1 reference

12 December 2020

Structures of two histidine ammonia-lyase modifications and implications for the catalytic mechanism

1 reference

12 December 2020

Histidase and histidinemia. Clinical and molecular considerations

1 reference

12 December 2020

Phenylalanine ammonia-lyase: Mirror-image packing of d- and l-phenylalanine and d- and l-transition state analogs into the active site

1 reference

12 December 2020

Recent Advances in Zinc Enzymology

1 reference

12 December 2020

L-phenylalanine ammonia-lyase. IV. Evidence that the prosthetic group contains a dehydroalanyl residue and mechanism of action

1 reference

12 December 2020

Purification, cloning, and functional expression of phenylalanine aminomutase: the first committed step in Taxol side-chain biosynthesis

1 reference

12 December 2020