Transcriptome-wide dynamics of extensive m (Q70201855)

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29 April 2020

title

Transcriptome-wide dynamics of extensive m6A mRNA methylation during Plasmodium falciparum blood-stage development (English)

1 reference

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29 April 2020

main subject

Plasmodium falciparum

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1

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29 April 2020

Jessica M Bryant

2

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29 April 2020

Ameya Sinha

3

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29 April 2020

Artur Scherf

7

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29 April 2020

author name string

Thibaud Reyser

4

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29 April 2020

Peter R Preiser

5

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29 April 2020

Peter C Dedon

6

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29 April 2020

language of work or name

English

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publication date

5 August 2019

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29 April 2020

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29 April 2020

volume

4

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29 April 2020

issue

12

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29 April 2020

page(s)

2246-2259

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The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

29 April 2020

cites work

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Antigenic variation in Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

A transcriptional switch underlies commitment to sexual development in malaria parasites

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

A genetically hard-wired metabolic transcriptome in Plasmodium falciparum fails to mount protective responses to lethal antifolates

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

From cradle to grave: RNA biology in malaria parasites.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Translational regulation in blood stages of the malaria parasite Plasmodium spp.: systems-wide studies pave the way

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Dynamic RNA Modifications in Gene Expression Regulation

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Rethinking m6A Readers, Writers, and Erasers.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Structural insights into the molecular mechanism of the m(6)A writer complex

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

5' UTR m(6)A Promotes Cap-Independent Translation

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

N6-methyladenosine-dependent regulation of messenger RNA stability

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Reading m6A in the Transcriptome: m6A-Binding Proteins

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

m6A modulates neuronal functions and sex determination in Drosophila

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Genome sequence of the human malaria parasite Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

CRISPR interference (CRISPRi) for sequence-specific control of gene expression

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Epigenetic editing by CRISPR/dCas9 in Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Nucleosome landscape and control of transcription in the human malaria parasite

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Landscape and Dynamics of Transcription Initiation in the Malaria Parasite Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Characterization of mRNA polyadenylation in the apicomplexa

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

The Role of mA/m-RNA Methylation in Stress Response Regulation

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Adenine methylation in eukaryotes: Apprehending the complex evolutionary history and functional potential of an epigenetic modification

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Identification of factors required for m6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Deciphering the ‘m6A code’ via quantitative profiling of m6A at single-nucleotide resolution

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

m(6)A RNA methylation promotes XIST-mediated transcriptional repression

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Translational regulation during stage transitions in malaria parasites

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Stable Translocation Intermediates Jam Global Protein Export in Plasmodium falciparum Parasites and Link the PTEX Component EXP2 with Translocation Activity

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Flexible guide-RNA design for CRISPR applications using Protospacer Workbench.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

ProtTest 3: fast selection of best-fit models of protein evolution

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

D²P²: database of disordered protein predictions

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

EuPathDB: the eukaryotic pathogen genomics database resource

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

The Sequence Alignment/Map format and SAMtools

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

deepTools2: a next generation web server for deep-sequencing data analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Circos: an information aesthetic for comparative genomics

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

WebLogo: A Sequence Logo Generator

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

CGAT: computational genomics analysis toolkit

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

HTSeq--a Python framework to work with high-throughput sequencing data

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021

Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA.

1 reference

https://api.crossref.org/works/10.1038%2FS41564-019-0521-7

7 January 2021