A domain model for eukaryotic DNA organization: a molecular basis for cell differentiation and chromosome evolution (Q68031931)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

20 September 2019

title

A domain model for eukaryotic DNA organization: a molecular basis for cell differentiation and chromosome evolution (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

20 September 2019

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J W Bodnar

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

20 September 2019

publication date

1 June 1988

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

Journal of Theoretical Biology

20 September 2019

number of pages

29

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based on heuristic

inferred from page(s)

published in

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

20 September 2019

volume

132

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

20 September 2019

issue

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

20 September 2019

page(s)

479-507

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

Organization of DNA replication in Physarum polycephalum. Attachment of origins of replicons and replication forks to the nuclear matrix

20 September 2019

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DNase I sensitive domain of the gene coding for the glycolytic enzyme glyceraldehyde-3-phosphate dehydrogenase

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Estrogen receptors in the nuclear matrix: direct demonstration using monoclonal antireceptor antibody

7 January 2021

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Genomic footprinting reveals cell type-specific DNA binding of ubiquitous factors

7 January 2021

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Isolation, characterization, and structure of the folded interphase genome of Drosophila melanogaster

7 January 2021

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Human U1 small nuclear RNA genes: extensive conservation of flanking sequences suggests cycles of gene amplification and transposition

7 January 2021

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Methylated and unmethylated DNA compartments in the sea urchin genome

7 January 2021

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Highly recurring sequence elements identified in eukaryotic DNAs by computer analysis are often homologous to regulatory sequences or protein binding sites

7 January 2021

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Proteins Tightly Bound to HeLa Cell DNA at Nuclear Matrix Attachment Sites

7 January 2021

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The nuclear shell in hela cell nuclei: Whole-mount electron microscopy of the dissociated and isolated nuclear periphery

7 January 2021

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Characterization of lamina-bound chromatin in the nuclear shell isolated from HeLa cells

7 January 2021

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Rate of replication of the murine immunoglobulin heavy-chain locus: evidence that the region is part of a single replicon

7 January 2021

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7 January 2021

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A relationship between replicon size and supercoiled loop domains in the eukaryotic genome.

7 January 2021

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Replication intermediates formed during initiation of DNA synthesis in methotrexate-resistant CHOC 400 cells are enriched for sequences derived from a specific, amplified restriction fragment.

7 January 2021

1 reference

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The relationship between chromosomal origins of replication and the nuclear matrix during the cell cycle

7 January 2021

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Site-specific nicking within the adenovirus inverted terminal repetition

7 January 2021

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Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites

7 January 2021

1 reference

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Nucleosome disruption precedes transcription and is largely limited to the transcribed domain of globin genes in murine erythroleukemia cells.

7 January 2021

1 reference

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The spatial organization of sequences involved in initiation and termination of eukaryotic DNA replication

7 January 2021

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Analysis of the attachment of replicating DNA to a nuclear matrix in mammalian interphase nuclei

7 January 2021

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Permanent attachment of replication origins to the nuclear matrix in BHK-cells

7 January 2021

1 reference

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Bidirectional chromosome replication: Some topological considerations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

DNA methylation and gene activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Eukaryotic chromosome replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

DNAase I-hypersensitive sites of chromatin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

The repeated GC-rich motifs upstream from the TATA box are important elements of the SV40 early promoter

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Sequences closely related to an immunoglobulin gene promoter/enhancer element occur also upstream of other eukaryotic and of prokaryotic genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Nuclease sensitivity of active chromatin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Replication timing of genes and middle repetitive sequences.

7 January 2021

1 reference

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SV40 deletion mutants lacking the 21-bp repeated sequences are viable, but have noncomplementable deficiences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Three-dimensional organization of Drosophila melanogaster interphase nuclei. I. Tissue-specific aspects of polytene nuclear architecture

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Three-dimensional organization of Drosophila melanogaster interphase nuclei. II. Chromosome spatial organization and gene regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Replication time of interspersed repetitive DNA sequences in hamsters.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

DNA Replication Sites within Nuclei of Mammalian Cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Localization of DNAase I-sensitive sequences to specific regions of interphase nuclei.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Identification of proteins tightly bound to herpes simplex virus DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

The level of expression of the rat growth hormone gene in liver tumor cells is at least eight orders of magnitude less than that in anterior pituitary cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Replication occurs at a nucleoskeleton.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication

7 January 2021

1 reference

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Promoter-specific activation of RNA polymerase II transcription by Sp1

7 January 2021

1 reference

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A subset of non-histone nuclear proteins reversibly stabilized by the sulfhydryl cross-linking reagent tetrathionate

7 January 2021

1 reference

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Nuclear matrix and transcriptional activity of the mouse alpha-globin gene

7 January 2021

1 reference

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Complete cloning of the duchenne muscular dystrophy (DMD) cDNA and preliminary genomic organization of the DMD gene in normal and affected individuals

7 January 2021

1 reference

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Nuclear matrix from resting and concanavalin A-stimulated human lymphocytes

7 January 2021

1 reference

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Status of the nuclear matrix in mature and embryonic chick erythrocyte nuclei.

7 January 2021

1 reference

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Generation of an internal matrix in mature avian erythrocyte nuclei during reactivation in cytoplasts

7 January 2021

1 reference

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Deoxyribonuclease I sensitivity of the nontranscribed sequences flanking the 5' and 3' ends of the ovomucoid gene and the ovalbumin and its related X and Y genes in hen oviduct nuclei

7 January 2021

1 reference

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Non-histone proteins and long-range organization of HeLa interphase DNA

7 January 2021

1 reference

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The general affinity of lac repressor for E. coli DNA: Implications for gene regulation in procaryotes and eucaryotes

7 January 2021

1 reference

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Interactions stabilizing DNA tertiary structure in the Escherichia coli chromosome investigated with ionizing radiation

7 January 2021

1 reference

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Chromosomal and nuclear distribution of the HindIII 1.9-kb human DNA repeat segment

7 January 2021

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Transcriptional selectivity of viral genes in mammalian cells

7 January 2021

1 reference

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Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Unmethylated DNA in mouse L cells. I. DNA fibre autoradiography

7 January 2021

1 reference

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The role of the nuclear matrix in the organization and function of DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Eukaryotic topoisomerases come into the limelight.

7 January 2021

1 reference

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Selfish DNA: the ultimate parasite

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

A fixed site of DNA replication in eucaryotic cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

The immunoglobulin octanucleotide: independent activity and selective interaction with enhancers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

The structure of histone-depleted metaphase chromosomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Sequence-specific binding of glucocorticoid receptor to MTV DNA at sites within and upstream of the transcribed region

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Multiple specific binding sites for purified glucocorticoid receptors on mammary tumor virus DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Structure and properties of the bacterial nucleoid

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Proteins tightly bound to DNA in the regions of DNA attachment to the skeletal structures of interphase nuclei and metaphase chromosomes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Replication origins are attached to the nuclear skeleton

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Identification of a protein linked to the ends of adenovirus DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

The organization of the herpes simplex virus genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Structure of the two distinct types of minichromosomes that are assembled on DNA injected in Xenopus oocytes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Deletion mutants in the gene encoding the herpes simplex virus type 1 immediate-early protein ICP0 exhibit impaired growth in cell culture

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

A trans-acting factor is responsible for the simian virus 40 enhancer activity in vitro

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

The SV40 enhancer can be dissected into multiple segments, each with a different cell type specificity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Changes in structure and composition of lymphocyte nuclei during mitogenic stimulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

SINEs and LINEs: Highly repeated short and long interspersed sequences in mammalian genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

The association of transcribed genes with the nuclear matrix of Drosophila cells during heat shock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Domains of the positive transcription factor specific for the Xenopus 5S RNA gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Association of cellular membrane of E. coli minicells with the origins/terminus region of replication of plasmid ColEl DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Isolation and visualisation of alkali stable protein/DNA complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

A promoter with an internal regulatory domain is part of the origin of replication in BPV-1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Characterization of the TRs/IRS origin of DNA replication of herpes simplex virus Type 1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

A region of the polyoma virus genome between the replication origin and late protein coding sequences is required in cis for both early gene expression and viral DNA replication

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Polyomavirus enhancer contains multiple redundant sequence elements that activate both DNA replication and gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Torsional stress promotes the DNAase I sensitivity of active genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Supercoiled loops and eucaryotic DNA replicaton

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Single-Copy and Amplified CAD Genes in Syrian Hamster Chromosomes Localized by a Highly Sensitive Method for In Situ Hybridization

7 January 2021

1 reference

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Assembly and propagation of repressed and depressed chromosomal states

7 January 2021

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7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Alkali-stably bound proteins in eukaryotic and prokaryotic DNAs show common characteristics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Antibodies to the most tightly bound proteins in eukaryotic DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Genome-linked proteins of viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Electron microscopic mapping of proteins bound to herpes simplex virus DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Transient alterations of the chromatin structure of sea urchin early histone genes during embryogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Steroid receptor regulated transcription of specific genes and gene networks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Steroid Receptors: Elements for Modulation of Eukaryotic Transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

In vivo mapping of DNA topoisomerase II-specific cleavage sites on SV40 chromatin.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Nuclear structure. Taken with a grain of salt.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

A general function of noncoding polynucleotide sequences. Mass binding of transconformational proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

Simian virus 40 associates with nuclear superstructures at early times of infection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-5193%2888%2980086-9

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/S0022-5193(88)80086-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:3226138%20AND%20SRC:MED&resulttype=core&format=json

20 September 2019

1 reference