Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex (Q61487177)

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English	Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex	article

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scholarly article

1 reference

Europe PubMed Central

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21 April 2020

Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30703164%20AND%20SRC:MED&resulttype=core&format=json

21 April 2020

CCR4 domain-containing protein 3, putative

1 reference

5 February 2019

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

NOT family protein, putative

0 references

protein CAF40, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4 domain-containing protein 1

0 references

CCR4-associated factor 1, putative

0 references

protein CAF40, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

CCR4-associated factor 1

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

protein CAF40, putative

0 references

CCR4-associated factor 1, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

protein CAF40, putative

0 references

CCR4-associated factor 1, putative

0 references

protein CAF40, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4-associated factor 1, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

protein CAF40, putative

0 references

CCR4-associated factor 1, putative

0 references

protein CAF40, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

CCR4-associated factor 1, putative, pseudogene

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

protein CAF40, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4-associated factor 1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

protein CAF40, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

CCR4-associated factor 1, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

protein CAF40, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

protein CAF40, putative

0 references

CCR4 domain-containing protein 1, putative

0 references

CCR4-associated factor 1, putative

0 references

CCR4-associated factor 1, putative

0 references

CCR4-NOT transcription complex subunit 5, putative

0 references

CCR4-NOT transcription complex subunit 1, putative

0 references

CCR4-NOT transcription complex subunit 2, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 3, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 4, putative

0 references

CCR4 domain-containing protein 2, putative

0 references

1

1 reference

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21 April 2020

Jenna Oberstaller

2

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21 April 2020

6

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21 April 2020

7

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21 April 2020

Scott E. Lindner

8

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21 April 2020

author name string

Michael P Walker

3

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21 April 2020

Allen M Minns

4

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21 April 2020

Mark F Kennedy

5

1 reference

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21 April 2020

language of work or name

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publication date

31 January 2019

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21 April 2020

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21 April 2020

15

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21 April 2020

1

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21 April 2020

e1007164

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21 April 2020

copyright license

Creative Commons Attribution 4.0 International

31 January 2019

1 reference

April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

object named as

DEseq2

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

0 references

An estimation of the number of malaria sporozoites ejected by a feeding mosquito

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The culture and preparation of gametocytes of Plasmodium falciparum for immunochemical, molecular, and mosquito infectivity studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and expression of a post-transcriptionally regulated malaria gene encoding a surface protein from the sexual stages of Plasmodium berghei

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of four families of yCCR4- and Mg2+-dependent endonuclease-related proteins in higher eukaryotes, and characterization of orthologs of yCCR4 with a conserved leucine-rich repeat essential for hCAF1/hPOP2 binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Plasmodium falciparum sexual development transcriptome: a microarray analysis using ontology-based pattern identification

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of sexual development of Plasmodium by translational repression

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ccr4 contributes to tolerance of replication stress through control of CRT1 mRNA poly(A) tail length

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

P bodies and the control of mRNA translation and degradation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How does multiple testing correction work?

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Universal features of post-transcriptional gene regulation are critical for Plasmodium zygote development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stress, drugs and the evolution of reproductive restraint in malaria parasites.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Subunits of the Drosophila CCR4-NOT complex and their roles in mRNA deadenylation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational repression by deadenylases

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genetic screen for attenuated growth identifies genes crucial for intraerythrocytic development of Plasmodium falciparum

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential expression analysis for sequence count data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Apicomplexan AP2 family: integral factors regulating Plasmodium development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Not1 mediates recruitment of the deadenylase Caf1 to mRNAs targeted for degradation by tristetraprolin

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transition of Plasmodium sporozoites into liver stage-like forms is regulated by the RNA binding protein Pumilio

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Puf-family RNA-binding protein Puf2 controls sporozoite conversion to liver stages in the malaria parasite

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CCR4-associated factor 1 coordinates the expression of Plasmodium falciparum egress and invasion proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Ccr4--not complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An essential role for the circadian-regulated gene nocturnin in osteogenesis: the importance of local timekeeping in skeletal homeostasis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plasmodium yoelii macrophage migration inhibitory factor is necessary for efficient liver-stage development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ccr4-Not complex: the control freak of eukaryotic cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nocturnin: at the crossroads of clocks and metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Total and putative surface proteomics of malaria parasite salivary gland sporozoites.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Perturbations of Plasmodium Puf2 expression and RNA-seq of Puf2-deficient sporozoites reveal a critical role in maintaining RNA homeostasis and parasite transmissibility

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transposon mutagenesis identifies genes essential for Plasmodium falciparum gametocytogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteomic analysis of the Plasmodium male gamete reveals the key role for glycolysis in flagellar motility.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Plasmodium bottleneck: malaria parasite losses in the mosquito vector

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HTSeq--a Python framework to work with high-throughput sequencing data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comprehensive evaluation of rodent malaria parasite genomes and gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational regulation during stage transitions in malaria parasites

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide RIP-Chip analysis of translational repressor-bound mRNAs in the Plasmodium gametocyte

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PlasmoGEM, a database supporting a community resource for large-scale experimental genetics in malaria parasites

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plasmodium vivax liver stage development and hypnozoite persistence in human liver-chimeric mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Architecture of the ubiquitylation module of the yeast Ccr4-Not complex.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A bioinformatic survey of RNA-binding proteins in Plasmodium

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

2016 update of the PRIDE database and its related tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The architecture of the Schizosaccharomyces pombe CCR4-NOT complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Ccr4-Not complex is a key regulator of eukaryotic gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct modes of recruitment of the CCR4-NOT complex by Drosophila and vertebrate Nanos

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CCR4 and CAF1 deadenylases have an intrinsic activity to remove the post-poly(A) sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reconstitution of Targeted Deadenylation by the Ccr4-Not Complex and the YTH Domain Protein Mmi1

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytoplasmic deadenylase Ccr4 is required for translational repression of LRG1 mRNA in the stationary phase

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Capturing in vivo RNA transcriptional dynamics from the malaria parasite Plasmodium falciparum

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ALBA4 modulates its stage-specific interactions and specific mRNA fates during Plasmodium yoelii growth and transmission

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative transcriptomics of female and male gametocytes in Plasmodium berghei and the evolution of sex in alveolates

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Short poly(A) tails are a conserved feature of highly expressed genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic CRISPR-Cas9-Mediated Modifications of Plasmodium yoelii ApiAP2 Genes Reveal Functional Insights into Parasite Development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30703164

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PPAT.1007164

1 reference

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21 April 2020

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21 April 2020

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21 April 2020

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