New tools for automated high-resolution cryo-EM structure determination in RELION-3 (Q58563641)

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2 May 2020

title

New tools for automated high-resolution cryo-EM structure determination in RELION-3 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30412051%20AND%20SRC:MED&resulttype=core&format=json

protein structure determination

2 May 2020

main subject

automation

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cryogenic electron microscopy

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author

Jasenko Zivanov

1

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2 May 2020

Takanori Nakane

2

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2 May 2020

Björn O Forsberg

3

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2 May 2020

Wim J H Hagen

5

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2 May 2020

Erik Lindahl

6

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2 May 2020

Sjors Scheres

7

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2 May 2020

author name string

Dari Kimanius

4

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2 May 2020

language of work or name

English

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publication date

9 November 2018

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2 May 2020

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2 May 2020

volume

7

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A new generation of the IMAGIC image processing system

2 May 2020

cites work

1 reference

12 December 2020

Correction of high-resolution data for curvature of the Ewald sphere

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12 December 2020

Accurate determination of local defocus and specimen tilt in electron microscopy

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Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

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Automated electron microscope tomography using robust prediction of specimen movements

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Ewald sphere correction for single-particle electron microscopy

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Obtaining TEM images with a uniform deviation parameter

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FREALIGN: high-resolution refinement of single particle structures

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EMAN2: an extensible image processing suite for electron microscopy

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The Laplacian of Gaussian and arbitrary z-crossings approach applied to automated single particle reconstruction.

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12 December 2020

Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction

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12 December 2020

Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy

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12 December 2020

3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

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12 December 2020

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

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12 December 2020

Detective quantum efficiency of electron area detectors in electron microscopy

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12 December 2020

Precise beam-tilt alignment and collimation are required to minimize the phase error associated with coma in high-resolution cryo-EM

1 reference

12 December 2020

A Bayesian view on cryo-EM structure determination.

1 reference

12 December 2020

Beam-induced motion of vitrified specimen on holey carbon film

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12 December 2020

Structural analysis of haemin demetallation by L-chain apoferritins

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12 December 2020

Prevention of overfitting in cryo-EM structure determination

1 reference

12 December 2020

Cross-neutralization of influenza A viruses mediated by a single antibody loop

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12 December 2020

RELION: implementation of a Bayesian approach to cryo-EM structure determination

1 reference

12 December 2020

Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

1 reference

12 December 2020

Quantifying the local resolution of cryo-EM density maps

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12 December 2020

The Resolution Revolution

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12 December 2020

Semi-automated selection of cryo-EM particles in RELION-1.3.

1 reference

12 December 2020

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

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12 December 2020

Alignment of direct detection device micrographs using a robust Optical Flow approach.

1 reference

12 December 2020

2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor

1 reference

12 December 2020

Advances in Single-Particle Electron Cryomicroscopy Structure Determination applied to Sub-tomogram Averaging

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12 December 2020

CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

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12 December 2020

An atomic structure of human γ-secretase

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12 December 2020

Alignment of cryo-EM movies of individual particles by optimization of image translations.

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12 December 2020

Gctf: Real-time CTF determination and correction

1 reference

12 December 2020

Sampling the conformational space of the catalytic subunit of human γ-secretase

1 reference

12 December 2020

EMPIAR: a public archive for raw electron microscopy image data.

1 reference

12 December 2020

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy.

1 reference

12 December 2020

Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery.

1 reference

12 December 2020

Unravelling biological macromolecules with cryo-electron microscopy.

1 reference

12 December 2020

Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2.

1 reference

12 December 2020

Robust image alignment for cryogenic transmission electron microscopy

1 reference

12 December 2020

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination

1 reference

12 December 2020

Helical reconstruction in RELION.

1 reference

12 December 2020

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

1 reference

12 December 2020

Accurate model annotation of a near-atomic resolution cryo-EM map.

1 reference

12 December 2020

Focus: The interface between data collection and data processing in cryo-EM.

1 reference

12 December 2020

High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE

1 reference

12 December 2020

Trends in the Electron Microscopy Data Bank (EMDB)

1 reference

12 December 2020

Addressing preferred specimen orientation in single-particle cryo-EM through tilting.

1 reference

12 December 2020

Cisplatin Binding Sites in Human H-Chain Ferritin.

1 reference

12 December 2020

Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy.

1 reference

12 December 2020

Ewald sphere correction using a single side-band image processing algorithm.

1 reference

12 December 2020

cisTEM, user-friendly software for single-particle image processing.

1 reference

12 December 2020

Pushing the resolution limit by correcting the Ewald sphere effect in single-particle Cryo-EM reconstructions.

1 reference

12 December 2020

Atomic Resolution Cryo-EM Structure of β-Galactosidase.

1 reference

12 December 2020

Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION.

1 reference

12 December 2020

High resolution single particle cryo-electron microscopy using beam-image shift

1 reference

12 December 2020

Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant

1 reference

12 December 2020

A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis

1 reference

12 December 2020

Identifiers

DOI

10.7554/ELIFE.42166

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30412051%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30412051%20AND%20SRC:MED&resulttype=core&format=json

2 May 2020

1 reference