Proteotyping (Q58283187)

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Lucia Gonzales-Siles

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Fredrik Boulund

3

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Åsa Lindgren

4

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Liselott Svensson-Stadler

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Anders Karlsson

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Erik Kristiansson

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Edward R.B. Moore

On finding lowest common ancestors in trees

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publication date

7 April 2017

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page(s)

419-450

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cites work

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

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Microbiology and proteomics, getting the best of both worlds!

21 January 2018

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Subproteomes of soluble and structure-bound Helicobacter pylori proteins analyzed by two-dimensional gel electrophoresis and mass spectrometry.

21 January 2018

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Matrix-assisted laser desorption ionization-time of flight mass spectrometry as an alternative to 16S rRNA gene sequencing for identification of difficult-to-identify bacterial strains

21 January 2018

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Detection of OmpK36 porin loss in Klebsiella spp. by matrix-assisted laser desorption ionization-time of flight mass spectrometry

21 January 2018

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The current state of microbial proteomics: where we are and where we want to go.

21 January 2018

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Rapid Bacterial Identification, Resistance, Virulence and Type Profiling using Selected Reaction Monitoring Mass Spectrometry.

21 January 2018

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Label-free SRM-based relative quantification of antibiotic resistance mechanisms in Pseudomonas aeruginosa clinical isolates

21 January 2018

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Analysis of intact proteins on a chromatographic time scale by electron transfer dissociation tandem mass spectrometry

21 January 2018

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Elucidation of the outer membrane proteome of Salmonella enterica serovar Typhimurium utilising a lipid-based protein immobilization technique

21 January 2018

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Proteomic insights into the lifestyle of an environmentally relevant marine bacterium

21 January 2018

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What are bacterial species?

21 January 2018

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TANDEM: matching proteins with tandem mass spectra

21 January 2018

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Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa

21 January 2018

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Insight into the core and variant exoproteomes of Listeria monocytogenes species by comparative subproteomic analysis.

21 January 2018

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Proteogenomic biomarkers for identification of Francisella species and subspecies by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry

21 January 2018

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Mass spectrometry-based proteomics combined with bioinformatic tools for bacterial classification

21 January 2018

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Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

21 January 2018

1 reference

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

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Sub-speciating Campylobacter jejuni by proteomic analysis of its protein biomarkers and their post-translational modifications

21 January 2018

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Electrospray ionization for mass spectrometry of large biomolecules

21 January 2018

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NovoHMM: a hidden Markov model for de novo peptide sequencing

21 January 2018

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Multidimensional separations-based shotgun proteomics

21 January 2018

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PepNovo: de novo peptide sequencing via probabilistic network modeling

21 January 2018

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Complete posttranslational modification mapping of pathogenic Neisseria meningitidis pilins requires top-down mass spectrometry

21 January 2018

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Evolution of H5N1 influenza virus through proteotyping of hemagglutinin with high resolution mass spectrometry

21 January 2018

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Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases

21 January 2018

1 reference

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Automated protein identification by tandem mass spectrometry: issues and strategies

21 January 2018

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The Orbitrap: a new mass spectrometer

21 January 2018

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Multidimensional separation of peptides for effective proteomic analysis

21 January 2018

1 reference

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Double-blind characterization of non-genome-sequenced bacteria by mass spectrometry-based proteomics

21 January 2018

1 reference

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Identification of Yersinia pestis and Escherichia coli strains by whole cell and outer membrane protein extracts with mass spectrometry-based proteomics

21 January 2018

1 reference

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Rapid identification and source-tracking of Listeria monocytogenes using MALDI-TOF mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Identification of agr-positive methicillin-resistant Staphylococcus aureus harbouring the class A mec complex by MALDI-TOF mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Analysis of the matrix-assisted laser desorption ionization-time of flight mass spectrum of Staphylococcus aureus identifies mutations that allow differentiation of the main clonal lineages

21 January 2018

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Horizontal gene transfer in human pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus.

21 January 2018

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BLAT—The BLAST-Like Alignment Tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

The low molecular weight proteome of Halobacterium salinarum

21 January 2018

1 reference

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Insufficient discriminatory power of MALDI-TOF mass spectrometry for typing of Enterococcus faecium and Staphylococcus aureus isolates

21 January 2018

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Outer membrane proteins: key players for bacterial adaptation in host niches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

21 January 2018

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Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer.

21 January 2018

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Identification of Haemophilus influenzae Type b Isolates by Use of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

21 January 2018

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Ten years of maintaining and expanding a microbial genome and metagenome analysis system

21 January 2018

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Top-down MS, a powerful complement to the high capabilities of proteolysis proteomics.

21 January 2018

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100% protein sequence coverage: a modern form of surrealism in proteomics

21 January 2018

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Microbial systematics and taxonomy: relevance for a microbial commons

21 January 2018

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Surfomics: shaving live organisms for a fast proteomic identification of surface proteins.

21 January 2018

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Trypsin cleaves exclusively C-terminal to arginine and lysine residues

21 January 2018

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Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data

21 January 2018

1 reference

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Rapid identification of proteins by peptide-mass fingerprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

High Molecular Weight Typing with MALDI-TOF MS - A Novel Method for Rapid Typing of Clostridium difficile

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Contribution of efflux pumps, porins, and β-lactamases to multidrug resistance in clinical isolates of Acinetobacter baumannii.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Tracing the transition of methicillin resistance in sub-populations of Staphylococcus aureus, using SELDI-TOF Mass Spectrometry and Artificial Neural Network Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Simultaneous determination of four active components in rat plasma by ultra-high performance liquid chromatography tandem-mass spectrometry/mass spectrometry and its application to a pharmacokinetic study after oral administration of Callicarpa nudi

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Current methodologies for proteomics of bacterial surface-exposed and cell envelope proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Horizontal gene transfer: building the web of life.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Microbial typing by matrix-assisted laser desorption ionization-time of flight mass spectrometry: do we need guidance for data interpretation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Pseudomonas aeruginosa - a phenomenon of bacterial resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Value of using multiple proteases for large-scale mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Sequence database searches via de novo peptide sequencing by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

The proteomic future: where mass spectrometry should be taking us.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

A simple shotgun proteomics method for rapid bacterial identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Mapping intact protein isoforms in discovery mode using top-down proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Rapid clinical bacteriology and its future impact

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Proteomics for routine identification of microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Intact protein mass spectrometry and top-down proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Phyloproteomic classification of unsequenced organisms by top-down identification of bacterial proteins using capLC-MS/MS on an Orbitrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Proteomics by mass spectrometry: approaches, advances, and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16

Strain-Level Typing and Identification of Bacteria Using Mass Spectrometry-Based Proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F9781118960226.CH16