Mapping of neutralizing antibody epitopes on the envelope of viruses obtained from plasma samples exhibiting broad cross-clade neutralization potential against HIV-1 (Q57452585)

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English	Mapping of neutralizing antibody epitopes on the envelope of viruses obtained from plasma samples exhibiting broad cross-clade neutralization potential against HIV-1	article

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29 April 2020

Mapping of Neutralizing Antibody Epitopes on the Envelope of Viruses Obtained from Plasma Samples Exhibiting Broad Cross-Clade Neutralization Potential Against HIV-1 (English)

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29 April 2020

Jagadish Chandrabose Sundaramurthi

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29 April 2020

Manickam Ashokkumar

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29 April 2020

Soumya Swaminathan

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Soumya Swaminathan

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29 April 2020

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Narayanaiah Cheedarla

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29 April 2020

Babu Hemalatha

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29 April 2020

Manohar Nesakumar

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29 April 2020

Srikanth Prasad Tripathy

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29 April 2020

Luke Elizabeth Hanna

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29 April 2020

Brahmaiah Anangi

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29 April 2020

K K Vidya Vijayan

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29 April 2020

S Kalyanaraman Vaniambadi

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29 April 2020

D Vadakkupattu Ramanathan

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29 April 2020

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20 December 2018

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29 April 2020

AIDS Research and Human Retroviruses

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29 April 2020

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29 April 2020

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29 April 2020

169-184

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29 April 2020

A genetic analysis of HIV-1 from Punjab, India reveals the presence of multiple variants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Envelope glycoprotein 120 sequences of primary HIV type 1 isolates from Pune and New Delhi, India.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transmission of genetically diverse strains of HIV-1 in Pune, India.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Increased promoter diversity reveals a complex phylogeny of human immunodeficiency virus type 1 subtype C in India

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary and immunological implications of contemporary HIV-1 variation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic diversity of human immunodeficiency virus type-1 in India

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crown and stem of the V3 loop play distinct roles in human immunodeficiency virus type 1 envelope glycoprotein interactions with the CCR5 coreceptor

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human monoclonal antibodies specific for conformation-sensitive epitopes of V3 neutralize human immunodeficiency virus type 1 primary isolates from various clades.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distribution of HIV-1 subtypes in female sex workers of Calcutta, India

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of subtype C human immunodeficiency virus type 1 by subtype-specific PCR and its use in the characterization of viruses circulating in the southern parts of India

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Limited evolution in the HIV type 1 pol region among acute seroconverters in Pune, India

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV type 1 genotypic variation in an antiretroviral treatment-naive population in southern India.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The V1, V2, and V3 regions of the human immunodeficiency virus type 1 envelope differentially affect the viral phenotype in an isolate-dependent manner

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human immunodeficiency virus type 1 env clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional impact of HIV coreceptor-binding site mutations

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improving on nature: focusing the immune response on the V3 loop.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cross-clade neutralizing activity of human anti-V3 monoclonal antibodies derived from the cells of individuals infected with non-B clades of human immunodeficiency virus type 1.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of partial deletions within the human immunodeficiency virus type 1 V3 loop on coreceptor tropism and sensitivity to entry inhibitors

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Viral membrane fusion

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Initial B-cell responses to transmitted human immunodeficiency virus type 1: virion-binding immunoglobulin M (IgM) and IgG antibodies followed by plasma anti-gp41 antibodies with ineffective control of initial viremia

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Factors associated with the development of cross-reactive neutralizing antibodies during human immunodeficiency virus type 1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human immunodeficiency virus type 2 (HIV-2)/HIV-1 envelope chimeras detect high titers of broadly reactive HIV-1 V3-specific antibodies in human plasma

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ElliPro: a new structure-based tool for the prediction of antibody epitopes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo gp41 antibodies targeting the 2F5 monoclonal antibody epitope mediate human immunodeficiency virus type 1 neutralization breadth

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis of HIV-1 reverse transcriptase sequences from 382 patients recruited in JJ Hospital of Mumbai, India, between 2002 and 2008.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The immune response during acute HIV-1 infection: clues for vaccine development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global trends in molecular epidemiology of HIV-1 during 2000-2007.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broad neutralization coverage of HIV by multiple highly potent antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Potent and Broad Neutralizing Antibody Recognizes and Penetrates the HIV Glycan Shield

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Targeting HIV-1 gp41 in close proximity to the membrane using antibody and other molecules.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 neutralization coverage is improved by combining monoclonal antibodies that target independent epitopes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PGV04, an HIV-1 gp120 CD4 binding site antibody, is broad and potent in neutralization but does not induce conformational changes characteristic of CD4.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

B-cell-lineage immunogen design in vaccine development with HIV-1 as a case study

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Near full-length genomic characterization of a HIV type 1 BC recombinant strain from Manipur, India

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Emergence of a unique recombinant form of HIV-1 from Manipur (India).

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of human immunodeficiency virus type 1 envelope structure in the induction of broadly neutralizing antibodies.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broad and potent neutralization of HIV-1 by a gp41-specific human antibody

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reliable B cell epitope predictions: impacts of method development and improved benchmarking

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broadly Neutralizing Antibody PGT121 Allosterically Modulates CD4 Binding via Recognition of the HIV-1 gp120 V3 Base and Multiple Surrounding Glycans

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular characterization of unique intersubtype HIV type 1 A1/C recombinant strain circulating in Pune, India

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Embracing the complexity of HIV immunology

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Global panel of HIV-1 Env reference strains for standardized assessments of vaccine-elicited neutralizing antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural insights on the role of antibodies in HIV-1 vaccine and therapy

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Which Antibody Functions are Important for an HIV Vaccine?

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV broadly neutralizing antibody targets

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of CD4-Binding Site Dependent Plasma Neutralizing Antibodies in an HIV-1 Infected Indian Individual

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibody responses to envelope glycoproteins in HIV-1 infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human Non-neutralizing HIV-1 Envelope Monoclonal Antibodies Limit the Number of Founder Viruses during SHIV Mucosal Infection in Rhesus Macaques

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antibodies to a conformational epitope on gp41 neutralize HIV-1 by destabilizing the Env spike

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational Epitope-Specific Broadly Neutralizing Plasma Antibodies Obtained from an HIV-1 Clade C-Infected Elite Neutralizer Mediate Autologous Virus Escape through Mutations in the V1 Loop

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broadly Neutralizing Antibodies against HIV-1 As a Novel Aspect of the Immune Response

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HIV-1 Envelope Trimer Design and Immunization Strategies To Induce Broadly Neutralizing Antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Corrigendum: Viraemia suppressed in HIV-1-infected humans by broadly neutralizing antibody 3BNC117.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Presenting native-like trimeric HIV-1 antigens with self-assembling nanoparticles

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of HIV Antibody VRC01 on Viral Rebound after Treatment Interruption

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular Characteristics of the Envelope of Vertically Transmitted HIV-1 Strains from Infants with HIV Infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Broad and potent cross clade neutralizing antibodies with multiple specificities in the plasma of HIV-1 subtype C infected individuals

1 reference

https://pubmed.ncbi.nlm.nih.gov/30328700

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1089/AID.2018.0224

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30328700%20AND%20SRC:MED&resulttype=core&format=json

29 April 2020

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30328700%20AND%20SRC:MED&resulttype=core&format=json

29 April 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30328700%20AND%20SRC:MED&resulttype=core&format=json

29 April 2020

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