The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs (Q57134654)

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25 March 2020

title

The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29722807%20AND%20SRC:MED&resulttype=core&format=json

computational mathematics

25 March 2020

main subject

molecular biology

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author

Simon Moxon

5

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25 March 2020

author name string

Matthew B Stocks

1

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25 March 2020

Irina Mohorianu

2

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25 March 2020

Matthew Beckers

3

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25 March 2020

Claudia Paicu

4

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25 March 2020

Joshua Thody

6

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25 March 2020

Tamas Dalmay

7

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25 March 2020

Vincent Moulton

8

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25 March 2020

language of work or name

English

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publication date

1 October 2018

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25 March 2020

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25 March 2020

volume

34

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25 March 2020

page(s)

3382-3384

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25 March 2020

issue

19

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Creative Commons Attribution 4.0 International

25 March 2020

copyright license

start time

2 May 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Comparison of alternative approaches for analysing multi-level RNA-seq data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

Evaluation of microRNA alignment techniques.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

sRNAtoolbox: an integrated collection of small RNA research tools

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

Molecular mechanisms of RNA interference

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

A comparison of methods for differential expression analysis of RNA-seq data

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

The Sequence Alignment/Map format and SAMtools

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

Origins and Mechanisms of miRNAs and siRNAs

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6157081

10.1093/BIOINFORMATICS/BTY338

2 November 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29722807%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/StocksMBPMTDM18

25 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29722807%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference