Rapid recovery of nuclear and mitochondrial genes by genome skimming from Northern Hemisphere freshwater crayfish (Q57000581)

Frederic Grandjean

1

0 references

Han Ming Gan

Han Ming Gan

3

0 references

Christopher M. Austin

9

Christopher M. Austin

0 references

Robert J. DiStefano

6

Robert J. Distefano

0 references

Martin Bláha

7

Martin Blaha

0 references

author name string

Yin Peng Lee

4

0 references

Tadashi Kawai

5

0 references

Angela J. Roles

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

8

0 references

publication date

19 April 2017

0 references

published in

Zoologica Scripta

0 references

volume

46

0 references

page(s)

718-728

0 references

issue

6

0 references

cites work

1 reference

ExaBayes: massively parallel bayesian tree inference for the whole-genome era.

21 January 2018

1 reference

The complete mitochondrial genome of the red-banded lobster Metanephrops thomsoni (Crustacea, Astacidea, Nephropidae): a novel gene order.

21 January 2018

1 reference

Basic local alignment search tool

21 January 2018

1 reference

DNA extraction from museum specimens of parasitic Hymenoptera

21 January 2018

1 reference

The complete mitogenome of the cow tail ray Pastinachus atrus (Macleay, 1883) (Elasmobranchii; Myliobatiformes; Dasyatidae).

21 January 2018

1 reference

The complete mitogenome of the whale shark parasitic copepod Pandarus rhincodonicus norman, Newbound & Knott (Crustacea; Siphonostomatoida; Pandaridae)--a new gene order for the copepoda.

21 January 2018

1 reference

Phylogeography of colonially nesting seabirds, with special reference to global matrilineal patterns in the sooty tern (Sterna fuscata).

21 January 2018

1 reference

An improved taxonomic sampling is a necessary but not sufficient condition for resolving inter-families relationships in Caridean decapods.

21 January 2018

1 reference

MITOS: improved de novo metazoan mitochondrial genome annotation

21 January 2018

1 reference

Trimmomatic: a flexible trimmer for Illumina sequence data

21 January 2018

1 reference

Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements.

21 January 2018

1 reference

The phylogenetic position of the East Asian freshwater crayfish Cambaroides within the Northern Hemisphere Astacoidea (Crustacea, Decapoda, Astacida) based on molecular data

21 January 2018

1 reference

The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (decapoda: achelata, astacidea, glypheidea, polychelida).

21 January 2018

1 reference

Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics.

21 January 2018

1 reference

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

21 January 2018

1 reference

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

The monophyletic origin of freshwater crayfish estimated from nuclear and mitochondrial DNA sequences

21 January 2018

1 reference

Genomic repeat abundances contain phylogenetic signal.

21 January 2018

1 reference

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes

21 January 2018

1 reference

The complete mitogenome of the marine bivalve Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae).

21 January 2018

1 reference

Coming of age: ten years of next-generation sequencing technologies

21 January 2018

1 reference

New developments in museum-based informatics and applications in biodiversity analysis

21 January 2018

1 reference

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach

21 January 2018

1 reference

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

1 reference

Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications

21 January 2018

1 reference

Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae).

21 January 2018

1 reference

Sequencing of the mitochondrial genome of the avocado lace bug Pseudacysta perseae (Heteroptera, Tingidae) using a genome skimming approach.

21 January 2018

1 reference

The complete mitochondrial genome of the invasive house crow Corvus splendens (Passeriformes: Corvidae).

21 January 2018

1 reference

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

21 January 2018

1 reference

Anchored hybrid enrichment for massively high-throughput phylogenomics

21 January 2018

1 reference

DNA capture reveals transoceanic gene flow in endangered river sharks

21 January 2018

1 reference

Sequence capture of ultraconserved elements from bird museum specimens

21 January 2018

1 reference

A new amplicon based approach of whole mitogenome sequencing for phylogenetic and phylogeographic analysis: An example of East African white-eyes (Aves, Zosteropidae).

21 January 2018

1 reference

Ultrafast approximation for phylogenetic bootstrap

21 January 2018

1 reference

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

21 January 2018

1 reference

Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications

21 January 2018

1 reference

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 January 2018

1 reference

Model-based multi-locus estimation of decapod phylogeny and divergence times

21 January 2018

1 reference

Mitogenomic sequences and evidence from unique gene rearrangements corroborate evolutionary relationships of myctophiformes (Neoteleostei).

21 January 2018

1 reference

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

1 reference

The Utility of Genome Skimming for Phylogenomic Analyses as Demonstrated for Glycerid Relationships (Annelida, Glyceridae).

21 January 2018

1 reference

Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes

21 January 2018

1 reference

Mitogenomic analysis of decapod crustacean phylogeny corroborates traditional views on their relationships

21 January 2018

1 reference

An approximately unbiased test of phylogenetic tree selection

21 January 2018

1 reference

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.

21 January 2018

1 reference

The Value of Museum Collections for Research and Society

21 January 2018

1 reference

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

21 January 2018

1 reference

MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes

21 January 2018

1 reference

Characterisation of 12 microsatellite loci in the Vietnamese commercial clam Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae) through next-generation sequencing

21 January 2018

1 reference

Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens

21 January 2018

1 reference

Sequencing degraded DNA from non-destructively sampled museum specimens for RAD-tagging and low-coverage shotgun phylogenetics

21 January 2018

1 reference

Gondwanan radiation of the Southern Hemisphere crayfishes (Decapoda: Parastacidae): evidence from fossils and molecules

21 January 2018

1 reference

Phylogeny of Decapoda using two nuclear protein-coding genes: origin and evolution of the Reptantia.

21 January 2018

1 reference