KREAP: an automated Galaxy platform to quantify in vitro re-epithelialization kinetics (Q55739128)

1

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Peter van Baarlen

object named as

Peter van Baarlen

3

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author name string

David B H van Zessen

2

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Michiel Kleerebezem

4

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Andrew P Stubbs

Creative Commons Attribution 4.0 International

5

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language of work or name

English

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publication date

1 July 2018

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published in

GigaScience

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volume

7

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issue

7

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copyright license

start time

28 June 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

CellProfiler

object named as

CellProfiler

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Streptococcus salivarius MS-oral-D6 promotes gingival re-epithelialization in vitro through a secreted serine protease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Lactobacillus rhamnosus GG Lysate Increases Re-Epithelialization of Keratinocyte Scratch Assays by Promoting Migration

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

The ImageJ ecosystem: An open platform for biomedical image analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Substrate stiffness regulates cadherin-dependent collective migration through myosin-II contractility.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Collective cell migration in morphogenesis, regeneration and cancer

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

TScratch: a novel and simple software tool for automated analysis of monolayer wound healing assays

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

How ERK1/2 activation controls cell proliferation and cell death: Is subcellular localization the answer?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Identification of genes that regulate epithelial cell migration using an siRNA screening approach

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

In vitro scratch assay: a convenient and inexpensive method for analysis of cell migration in vitro

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Modeling of the bacterial growth curve

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

MAP kinases and cell migration

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Cell migration: integrating signals from front to back

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Epidermal growth factor and transforming growth factor-alpha: differential intracellular routing and processing of ligand-receptor complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

An optimized method for accurate quantification of cell migration using human small intestine cells.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Effect of bacteria on the wound healing behavior of oral epithelial cells

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

The influence of oral bacteria on epithelial cell migration in vitro

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

A high throughput, interactive imaging, bright-field wound healing assay.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Histatins enhance wound closure with oral and non-oral cells.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

Transcriptional control of wound repair

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

CellProfiler: free, versatile software for automated biological image analysis

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

A high-throughput cell migration assay using scratch wound healing, a comparison of image-based readout methods

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6048990

A Threshold Selection Method from Gray-Level Histograms

12 August 2018

1 reference

COCI

https://opencitations.net/index/coci/api/v1/references/10.1093/GIGASCIENCE/GIY078

Watersheds in digital spaces: an efficient algorithm based on immersion simulations

1 April 2023

1 reference

COCI

https://opencitations.net/index/coci/api/v1/references/10.1093/GIGASCIENCE/GIY078

10.1093/GIGASCIENCE/GIY078

1 April 2023

Identifiers

DOI

0 references

Fatcat ID

release_6xwtghcaarafhig22i4ucrxlee

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6xwtghcaarafhig22i4ucrxlee