Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis. (Q55480896)

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2 April 2020

title

Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (English)

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2 April 2020

1

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2 April 2020

Jan Hasenauer

series ordinal

3

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2 April 2020

2

Fabian Fröhlich

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2 April 2020

language of work or name

English

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publication date

1 July 2018

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2 April 2020

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2 April 2020

volume

34

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issue

13

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2 April 2020

page(s)

i151-i159

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Creative Commons Attribution-NonCommercial 4.0 International

2 April 2020

copyright license

start time

27 June 2018

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

PESTO: Parameter EStimation TOolbox

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Predicting ligand-dependent tumors from multi-dimensional signaling features.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

ODE constrained mixture modelling: a method for unraveling subpopulation structures and dynamics

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Lessons learned from quantitative dynamical modeling in systems biology

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Profile likelihood in systems biology

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

State-time spectrum of signal transduction logic models

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Covering a broad dynamic range: information processing at the erythropoietin receptor

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Dynamic modeling of the central carbon metabolism of Escherichia coli.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

Exploiting the bootstrap method for quantifying parameter confidence intervals in dynamical systems.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022646

10.1093/BIOINFORMATICS/BTY230

12 August 2018

Identifiers

DOI

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journals/bioinformatics/StaporFH18

2 April 2020

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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2 April 2020

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