Systemic factors dominate mammal protein evolution. (Q55227047)

27 June 2018

title

Systemic factors dominate mammal protein evolution. (English)

1 reference

27 June 2018

main subject

protein evolution

0 references

author name string

Alexander E Vinogradov

series ordinal

1

1 reference

27 June 2018

publication date

6 January 2010

1 reference

27 June 2018

Proceedings of the Royal Society B

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

27 June 2018

volume

277

1 reference

27 June 2018

page(s)

1403-1408

1 reference

27 June 2018

issue

1686

1 reference

27 June 2018

Database resources of the National Center for Biotechnology Information

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

STRING 8--a global view on proteins and their functional interactions in 630 organisms

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Clustal W and Clustal X version 2.0

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

PAML 4: phylogenetic analysis by maximum likelihood

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Specificity in protein interactions and its relationship with sequence diversity and coevolution

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Stratus not altocumulus: a new view of the yeast protein interaction network

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Evolutionary systems biology: links between gene evolution and function

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Coping with the quantitative genomics 'elephant': the correlation between the gene dispensability and evolution rate

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Coevolution of gene expression among interacting proteins

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Compactness of human housekeeping genes: selection for economy or genomic design?

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

A gene atlas of the mouse and human protein-encoding transcriptomes

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

The signature of selection mediated by expression on human genes

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Human housekeeping genes are compact

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Selection for short introns in highly expressed genes

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Evolutionary rate in the protein interaction network

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Global versus local centrality in evolution of yeast protein network.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

GSEA-P: a desktop application for Gene Set Enrichment Analysis.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

"Genome design" model: evidence from conserved intronic sequence in human-mouse comparison

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

A single determinant dominates the rate of yeast protein evolution

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2871935

Characterization and transferability of microsatellite markers of the cultivated peanut (Arachis hypogaea)

13 August 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2009.1865

The Evolutionary Rate of a Protein Is Influenced by Features of the Interacting Partners

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2009.1865

Costly Mistakes: Translational Infidelity and Protein Homeostasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2009.1865

Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1098%2FRSPB.2009.1865

Conservation and coevolution in the scale-free human gene coexpression network

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20053642

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein Evolution Is Faster Outside the Cell

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20053642

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1098/RSPB.2009.1865

1 reference

27 June 2018

PMCID

2871935

1 reference

27 June 2018

PubMed ID

20053642

1 reference

27 June 2018