A Positive Feedback Amplifier Circuit That Regulates Interferon (IFN)-Stimulated Gene Expression and Controls Type I and Type II IFN Responses. (Q54976472)

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English	A Positive Feedback Amplifier Circuit That Regulates Interferon (IFN)-Stimulated Gene Expression and Controls Type I and Type II IFN Responses.	scientific article

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scholarly article

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Europe PubMed Central

22 June 2018

http://europepmc.org/abstract/PMC/5985295

4 references

20 November 2019

11 December 2019

22 December 2019

19 September 2020

A Positive Feedback Amplifier Circuit That Regulates Interferon (IFN)-Stimulated Gene Expression and Controls Type I and Type II IFN Responses. (English)

1 reference

Europe PubMed Central

22 June 2018

http://europepmc.org/abstract/PMC/5985295

1 reference

20 November 2019

DNA-binding protein

1 reference

11 December 2019

transcription factor

1 reference

22 December 2019

1 reference

19 September 2020

4

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3 June 2020

3

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Joanna Wesoly

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3 June 2020

Katarzyna Błaszczyk

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object named as

Katarzyna Blaszczyk

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3 June 2020

author name string

Agata Michalska

1

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publication date

28 May 2018

5 references

Europe PubMed Central

22 June 2018

http://europepmc.org/abstract/PMC/5985295

20 November 2019

11 December 2019

22 December 2019

19 September 2020

Frontiers in Immunology

5 references

20 November 2019

11 December 2019

22 December 2019

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29892288%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

19 September 2020

9

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3 June 2020

1135

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3 June 2020

copyright license

Creative Commons Attribution 4.0 International

4 references

Europe PubMed Central

20 November 2019

Europe PubMed Central

11 December 2019

Europe PubMed Central

22 December 2019

Europe PubMed Central

19 September 2020

copyright status

0 references

Coordinated regulation of IFITM1, 2 and 3 genes by an IFN-responsive enhancer through long-range chromatin interactions.

1 reference

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24 June 2018

Unphosphorylated ISGF3 drives constitutive expression of interferon-stimulated genes to protect against viral infections.

1 reference

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24 June 2018

Unphosphorylated STAT1 represses apoptosis in macrophages during Mycobacteriumtuberculosis infection.

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24 June 2018

Properties of STAT1 and IRF1 enhancers and the influence of SNPs.

1 reference

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24 June 2018

Canonical and Non-Canonical Aspects of JAK-STAT Signaling: Lessons from Interferons for Cytokine Responses

1 reference

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24 June 2018

A novel kindred with inherited STAT2 deficiency and severe viral illness

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24 June 2018

STAT1 is essential for the inhibition of hepatitis C virus replication by interferon-λ but not by interferon-α.

1 reference

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24 June 2018

IFN regulatory factor 1 restricts hepatitis E virus replication by activating STAT1 to induce antiviral IFN-stimulated genes

1 reference

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24 June 2018

Heterozygous STAT1 gain-of-function mutations underlie an unexpectedly broad clinical phenotype

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24 June 2018

The unique role of STAT2 in constitutive and IFN-induced transcription and antiviral responses.

1 reference

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24 June 2018

Interferon-induced transmembrane protein 1 (IFITM1) overexpression enhances the aggressive phenotype of SUM149 inflammatory breast cancer cells in a signal transducer and activator of transcription 2 (STAT2)-dependent manner.

1 reference

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24 June 2018

Distal regulatory element of the STAT1 gene potentially mediates positive feedback control of STAT1 expression

1 reference

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24 June 2018

Genome-wide Identification of IRF1 Binding Sites Reveals Extensive Occupancy at Cell Death Associated Genes

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24 June 2018

STAT2/IRF9 directs a prolonged ISGF3-like transcriptional response and antiviral activity in the absence of STAT1.

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24 June 2018

IFN-λ4: the paradoxical new member of the interferon lambda family

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24 June 2018

Interferon-stimulated genes: a complex web of host defenses

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24 June 2018

STAT2 and IRF9: Beyond ISGF3.

1 reference

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24 June 2018

STATs get their move on

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24 June 2018

STAT2 phosphorylation and signaling

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24 June 2018

STAT1-cooperative DNA binding distinguishes type 1 from type 2 interferon signaling

1 reference

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24 June 2018

Regulation of type I interferon responses

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24 June 2018

Dynamic trans-acting factor colocalization in human cells

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24 June 2018

Transcriptional regulation by STAT1 and STAT2 in the interferon JAK-STAT pathway

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24 June 2018

IFNβ-dependent increases in STAT1, STAT2, and IRF9 mediate resistance to viruses and DNA damage

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24 June 2018

Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis.

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24 June 2018

REST negatively and ISGF3 positively regulate the human STAT1 gene in melanoma.

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24 June 2018

STAT2 deficiency and susceptibility to viral illness in humans

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24 June 2018

Interferon-γ upregulates expression of IFP35 gene in HeLa cells via interferon regulatory factor-1

1 reference

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24 June 2018

A conserved regulatory element located far downstream of the gls locus modulates gls expression through chromatin loop formation during myogenesis

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24 June 2018

Regulation of the innate immune system by ubiquitin and ubiquitin-like modifiers

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24 June 2018

An integrated encyclopedia of DNA elements in the human genome

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24 June 2018

A novel STAT1 mutation associated with disseminated mycobacterial disease

1 reference

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24 June 2018

The role of signal transducer and activator of transcription-2 in the interferon response

1 reference

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24 June 2018

Genome-wide analysis of interferon regulatory factor I binding in primary human monocytes

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24 June 2018

DDX60, a DEXD/H box helicase, is a novel antiviral factor promoting RIG-I-like receptor-mediated signaling

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24 June 2018

Chromatin dynamics of gene activation and repression in response to interferon alpha (IFN(alpha)) reveal new roles for phosphorylated and unphosphorylated forms of the transcription factor STAT2

1 reference

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24 June 2018

A diverse range of gene products are effectors of the type I interferon antiviral response

1 reference

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24 June 2018

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response

1 reference

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24 June 2018

A novel role for IFN-stimulated gene factor 3II in IFN-γ signaling and induction of antiviral activity in human cells

1 reference

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24 June 2018

Intracellular expression of IRF9 Stat fusion protein overcomes the defective Jak-Stat signaling and inhibits HCV RNA replication

1 reference

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24 June 2018

Interferon-lambda: a new addition to an old family

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24 June 2018

Identification of alpha interferon-induced genes associated with antiviral activity in Daudi cells and characterization of IFIT3 as a novel antiviral gene

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24 June 2018

Herc5 attenuates influenza A virus by catalyzing ISGylation of viral NS1 protein

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24 June 2018

The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus

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24 June 2018

Viral induction of the zinc finger antiviral protein is IRF3-dependent but NF-kappaB-independent

1 reference

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24 June 2018

Paramyxovirus disruption of interferon signal transduction: STATus report

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24 June 2018

Unphosphorylated STAT1 prolongs the expression of interferon-induced immune regulatory genes

1 reference

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24 June 2018

IRF-9/STAT2 [corrected] functional interaction drives retinoic acid-induced gene G expression independently of STAT1.

1 reference

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24 June 2018

Histone modifications at human enhancers reflect global cell-type-specific gene expression

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24 June 2018

A rapid simple approach to quantify chromosome conformation capture.

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24 June 2018

A ChIP-chip approach reveals a novel role for transcription factor IRF1 in the DNA damage response

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24 June 2018

Interferon-inducible antiviral effectors

1 reference

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24 June 2018

IFP35 is involved in the antiviral function of interferon by association with the viral tas transactivator of bovine foamy virus

1 reference

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24 June 2018

Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu

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24 June 2018

Interferons and viruses: an interplay between induction, signalling, antiviral responses and virus countermeasures

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24 June 2018

Interferons at age 50: past, current and future impact on biomedicine

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24 June 2018

Molecular mechanism of lipopolysaccharide-induced SOCS-3 gene expression in macrophages and microglia.

1 reference

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24 June 2018

SOCS proteins, cytokine signalling and immune regulation

1 reference

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24 June 2018

STAT activation and differential complex formation dictate selectivity of interferon responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Distinct modes of action applied by transcription factors STAT1 and IRF1 to initiate transcription of the IFN-gamma-inducible gbp2 gene.

1 reference

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24 June 2018

Novel STAT1 alleles in otherwise healthy patients with mycobacterial disease

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24 June 2018

Identification of GAS-dependent interferon-sensitive target genes whose transcription is STAT2-dependent but ISGF3-independent

1 reference

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24 June 2018

Global changes in STAT target selection and transcription regulation upon interferon treatments

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24 June 2018

A positive autoregulatory loop of Jak-STAT signaling controls the onset of astrogliogenesis

1 reference

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24 June 2018

Functional relevance of the conserved DNA-binding domain of STAT2.

1 reference

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24 June 2018

Nucleocytoplasmic shuttling of STAT transcription factors.

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24 June 2018

Getting the message across, STAT! Design principles of a molecular signaling circuit.

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24 June 2018

Phospholipid scramblase 1 potentiates the antiviral activity of interferon

1 reference

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24 June 2018

STAT2 nuclear trafficking

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24 June 2018

Studies on the production, mode of action and properties of interferon.

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24 June 2018

DNA binding controls inactivation and nuclear accumulation of the transcription factor Stat1.

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24 June 2018

Impaired response to interferon-alpha/beta and lethal viral disease in human STAT1 deficiency

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24 June 2018

A hybrid IRF9-STAT2 protein recapitulates interferon-stimulated gene expression and antiviral response

1 reference

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24 June 2018

Stats: transcriptional control and biological impact

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24 June 2018

Kinetics of a gamma interferon response: expression and assembly of CIITA promoter IV and inhibition by methylation

1 reference

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24 June 2018

Isolation and characterization of a human STAT1 gene regulatory element. Inducibility by interferon (IFN) types I and II and role of IFN regulatory factor-1.

1 reference

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24 June 2018

On the role of IRF in host defense

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24 June 2018

Activities of IRF-1

1 reference

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24 June 2018

Roles of Stat1, Stat2, and interferon regulatory factor-9 (IRF-9) in interferon tau regulation of IRF-1.

1 reference

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24 June 2018

Cooperation of STAT-1 and IRF-1 in interferon-gamma-induced transcription of the gp91(phox) gene

1 reference

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24 June 2018

Impairment of mycobacterial but not viral immunity by a germline human STAT1 mutation

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24 June 2018

The interferon-inducible Stat2:Stat1 heterodimer preferentially binds in vitro to a consensus element found in the promoters of a subset of interferon-stimulated genes

1 reference

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24 June 2018

IRF family of transcription factors as regulators of host defense

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24 June 2018

Characterization of the gene encoding the 100-kDa form of human 2',5' oligoadenylate synthetase.

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24 June 2018

How Stat1 mediates constitutive gene expression: a complex of unphosphorylated Stat1 and IRF1 supports transcription of the LMP2 gene

1 reference

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24 June 2018

A unique ISRE, in the TATA-less human Isg20 promoter, confers IRF-1-mediated responsiveness to both interferon type I and type II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

The V protein of simian virus 5 inhibits interferon signalling by targeting STAT1 for proteasome-mediated degradation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

IFN-alpha activates Stat6 and leads to the formation of Stat2:Stat6 complexes in B cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Molecular cloning and characterization of a surface antigen preferentially overexpressed on multiple myeloma cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

The proximal interferon-stimulated response elements are essential for interferon responsiveness: a promoter analysis of the antiviral MxA gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

How cells respond to interferons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Functional domains of interferon regulatory factor I (IRF-1)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

GAS elements: a few nucleotides with a major impact on cytokine-induced gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Essential and non-redundant roles of p48 (ISGF3 gamma) and IRF-1 in both type I and type II interferon responses, as revealed by gene targeting studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Stat2 is a transcriptional activator that requires sequence-specific contacts provided by stat1 and p48 for stable interaction with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Regulation of LMP2 and TAP1 genes by IRF-1 explains the paucity of CD8+ T cells in IRF-1-/- mice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

ISGF3 gamma p48, a specificity switch for interferon activated transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Formation of STAT1-STAT2 heterodimers and their role in the activation of IRF-1 gene transcription by interferon-alpha

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Tyrosine phosphorylated p91 binds to a single element in the ISGF2/IRF-1 promoter to mediate induction by IFN alpha and IFN gamma, and is likely to autoregulate the p91 gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Jak-STAT pathways and transcriptional activation in response to IFNs and other extracellular signaling proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Structure, chromosome localization, and regulation of expression of the interferon-regulated mouse Ifi54/Ifi56 gene family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

The genomic structure of the STAT genes: multiple exons in coincident sites in Stat1 and Stat2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Early events in signalling by interferons.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Structure and regulation of the human interferon regulatory factor 1 (IRF-1) and IRF-2 genes: implications for a gene network in the interferon system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Interactions of alpha- and gamma-interferon in the transcriptional regulation of the gene encoding a guanylate-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Purification and cloning of interferon-stimulated gene factor 2 (ISGF2): ISGF2 (IRF-1) can bind to the promoters of both beta interferon- and interferon-stimulated genes but is not a primary transcriptional activator of either

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Transcription factors induced by interferons alpha and gamma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Cytoplasmic activation of GAF, an IFN-gamma-regulated DNA-binding factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Overlapping elements in the guanylate-binding protein gene promoter mediate transcriptional induction by alpha and gamma interferons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

24 June 2018

Deciphering of the Human Interferon-Regulated Proteome by Mass Spectrometry-Based Quantitative Analysis Reveals Extent and Dynamics of Protein Induction and Repression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

13 August 2018

Different STAT Transcription Complexes Drive Early and Delayed Responses to Type I IFNs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

13 August 2018

Antiviral effects of the interferon-induced protein guanylate binding protein 1 and its interaction with the hepatitis C virus NS5B protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

13 August 2018

Suppressor of cytokine signaling 1 regulates the immune response to infection by a unique inhibition of type I interferon activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

13 August 2018

Sendai virus C protein physically associates with Stat1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

13 August 2018

The p69/71 2-5A synthetase promoter contains multiple regulatory elements required for interferon-alpha-induced expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

13 August 2018

The interferon-stimulable response elements of two human genes detect overlapping sets of transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

2 November 2018

Cytoplasmic activation of ISGF3, the positive regulator of interferon-alpha-stimulated transcription, reconstituted in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

2 November 2018

A Specific Interferon (IFN)-stimulated Response Element of the Distal HLA-G Promoter Binds IFN-regulatory Factor 1 and Mediates Enhancement of This Nonclassical Class I Gene by IFN-β

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5985295

30 November 2018

Identification and characterization of an interferon (IFN)-stimulated response element-IFN-stimulated gene factor 3-independent signaling pathway for IFN-alpha

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892288

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Application of genomic DNA affinity chromatography identifies multiple interferon-alpha-regulated Stat2 complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892288

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interferon induction of TAP1: the phosphatase SHP-1 regulates crossover between the IFN-alpha/beta and the IFN-gamma signal-transduction pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892288

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two gamma-interferon-activation sites (GAS) on the promoter of the human intercellular adhesion molecule (ICAM-1) gene are required for induction of transcription by IFN-gamma

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892288

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Introduction: interferon signals: what is classical and what is nonclassical?

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892288

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The chromatin-remodeling enzyme BRG1 coordinates CIITA induction through many interdependent distal enhancers

1 reference

https://pubmed.ncbi.nlm.nih.gov/29892288

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3389/FIMMU.2018.01135

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29892288%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29892288%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29892288%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

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