Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology. (Q54521059)

30 May 2018

title

Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology. (English)

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30 May 2018

author name string

Helge Auner

1

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30 May 2018

Malcolm Buckle

2

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30 May 2018

Annette Deufel

3

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30 May 2018

Tamara Kutateladze

4

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30 May 2018

Linda Lazarus

5

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30 May 2018

Ramesh Mavathur

6

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30 May 2018

Georgi Muskhelishvili

7

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30 May 2018

Iain Pemberton

8

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30 May 2018

Robert Schneider

9

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30 May 2018

Andrew Travers

10

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30 May 2018

language of work or name

English

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publication date

1 August 2003

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30 May 2018

Journal of Molecular Biology

published in

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30 May 2018

volume

331

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30 May 2018

issue

2

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30 May 2018

page(s)

331-344

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30 May 2018

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

1 reference

Escherichia coli tyrT gene transcription is sensitive to DNA supercoiling in its native chromosomal context: effect of DNA topoisomerase IV overexpression on tyrT promoter function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

DNA supercoiling and transcription in Escherichia coli: The FIS connection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Stringent control of bacterial transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Genetically separable functional elements mediate the optimal expression and stringent regulation of a bacterial tRNA gene.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Effects of Fis on ribosome synthesis and activity and on rRNA promoter activities in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Stringent control and growth-rate-dependent control have nonidentical promoter sequence requirements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Alteration of the growth-rate-dependent regulation of Escherichia coli tyrT expression by promoter mutations.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Requirement for an upstream element for optimal transcription of a bacterial tRNA gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

DNA determinants of rRNA synthesis in E. coli: growth rate dependent regulation, feedback inhibition, upstream activation, antitermination

7 January 2021

1 reference

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Transcription of the tRNA-tufB operon of Escherichia coli: activation, termination and antitermination

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Sequence determinants for promoter strength in the leuV operon of Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter

7 January 2021

1 reference

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Regulation of rRNA transcription is remarkably robust: FIS compensates for altered nucleoside triphosphate sensing by mutant RNA polymerases at Escherichia coli rrn P1 promoters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

FIS activates sequential steps during transcription initiation at a stable RNA promoter

7 January 2021

1 reference

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The mechanism of trans-activation of the Escherichia coli operon thrU(tufB) by the protein FIS. A model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Promoter protection by a transcription factor acting as a local topological homeostat

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli

7 January 2021

1 reference

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Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli

7 January 2021

1 reference

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Protein-DNA cross-linking at the lac promoter

7 January 2021

1 reference

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13 Laser cross-linking of protein-nucleic acid complexes

7 January 2021

1 reference

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FIS is a regulator of metabolism in Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Analysis of E. coli promoter sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Non-canonical sequence elements in the promoter structure. Cluster analysis of promoters recognized by Escherichia coli RNA polymerase

7 January 2021

1 reference

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A tRNATyr promoter with an altered in vitro response to ppGpp

7 January 2021

1 reference

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Regulation of rRNA transcription correlates with nucleoside triphosphate sensing

7 January 2021

1 reference

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All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent

7 January 2021

1 reference

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DNA microloops and microdomains: a general mechanism for transcription activation by torsional transmission.

7 January 2021

1 reference

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Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerization

7 January 2021

1 reference

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Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene.

7 January 2021

1 reference

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Topoisomerase IV is a target of quinolones in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

THE PROPERTIES OF REPRESSOR AND THE KINETICS OF ITS ACTION

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

Enhancement of ribosomal ribonucleic acid synthesis by deoxyribonucleic acid gyrase activity in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900727-7

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7 January 2021

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Identifiers

DOI

10.1016/S0022-2836(03)00727-7

1 reference

30 May 2018

PubMed ID

12888342

1 reference

30 May 2018