Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C). (Q54471240)

30 May 2018

title

Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C). (English)

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30 May 2018

Wouter de Laat

4

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author name string

Marieke Louwers

1

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30 May 2018

Erik Splinter

2

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30 May 2018

Roel van Driel

3

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30 May 2018

Maike Stam

5

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30 May 2018

publication date

30 July 2009

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30 May 2018

published in

Nature Protocols

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30 May 2018

volume

4

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30 May 2018

issue

8

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30 May 2018

page(s)

1216-1229

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30 May 2018

https://scigraph.springernature.com/pub.10.1038/nprot.2009.113

exact match

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cites work

Looping and interaction between hypersensitive sites in the active beta-globin locus

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome

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Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

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Transient homologous chromosome pairing marks the onset of X inactivation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Long-range chromatin regulatory interactions in vivo

21 January 2018

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Capturing chromosome conformation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Tandem repetitive transgenes and fluorescent chromatin tags alter local interphase chromosome arrangement in Arabidopsis thaliana.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Tissue- and expression level-specific chromatin looping at maize b1 epialleles.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

21 January 2018

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An evaluation of 3C-based methods to capture DNA interactions

21 January 2018

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Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

21 January 2018

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SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes.

21 January 2018

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ChIP-based methods for the identification of long-range chromatin interactions

21 January 2018

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Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

21 January 2018

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The three 'C' s of chromosome conformation capture: controls, controls, controls.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

Suggestive evidence for chromosomal localization of non-coding RNA from imprinted LIT1

31 March 2020

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https://api.crossref.org/works/10.1038%2FNPROT.2009.113

3C technology: analyzing the spatial organization of genomic loci in vivo.

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NPROT.2009.113

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30 May 2018

PubMed ID

19644461

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30 May 2018