Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogens. (Q54201271)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29791438%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

title

Identity-by-descent analyses for measuring population dynamics and selection in recombining pathogens (English)

1 reference

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27 March 2020

1 reference

1

1 reference

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27 March 2020

Stuart Lee

2

1 reference

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27 March 2020

Alyssa E Barry

4

1 reference

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27 March 2020

author name string

Melanie Bahlo

5

1 reference

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27 March 2020

Ivo Mueller

3

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27 March 2020

publication date

23 May 2018

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27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29791438%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

volume

14

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27 March 2020

issue

5

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27 March 2020

page(s)

e1007279

1 reference

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Creative Commons Attribution 4.0 International

27 March 2020

copyright license

start time

23 May 2018

1 reference

April 2022 Public Data File from Crossref

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5988311

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10 July 2018

1 reference

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Exceptionally long-range haplotypes in Plasmodium falciparum chromosome 6 maintained in an endemic African population

10 July 2018

1 reference

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Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum

10 July 2018

1 reference

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Globally prevalent PfMDR1 mutations modulate Plasmodium falciparum susceptibility to artemisinin-based combination therapies.

10 July 2018

1 reference

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XIBD: software for inferring pairwise identity by descent on the X chromosome.

10 July 2018

1 reference

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1 reference

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10 July 2018

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10 July 2018

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Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia

10 July 2018

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A molecular marker of artemisinin-resistant Plasmodium falciparum malaria

10 July 2018

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Inferring demographic history from a spectrum of shared haplotype lengths

10 July 2018

1 reference

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Identity by descent: variation in meiosis, across genomes, and in populations

10 July 2018

1 reference

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Detecting and characterizing genomic signatures of positive selection in global populations

10 July 2018

1 reference

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SLiM: simulating evolution with selection and linkage.

10 July 2018

1 reference

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Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia

10 July 2018

1 reference

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Modulation of PF10_0355 (MSPDBL2) alters Plasmodium falciparum response to antimalarial drugs

10 July 2018

1 reference

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Mitotic evolution of Plasmodium falciparum shows a stable core genome but recombination in antigen families

10 July 2018

1 reference

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Identity by descent between distant relatives: detection and applications

10 July 2018

1 reference

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Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite

10 July 2018

1 reference

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Using identity by descent estimation with dense genotype data to detect positive selection

10 July 2018

1 reference

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Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing

10 July 2018

1 reference

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SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites

10 July 2018

1 reference

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Harnessing genomics and genome biology to understand malaria biology

10 July 2018

1 reference

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Inference of population structure using dense haplotype data

10 July 2018

1 reference

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ART: a next-generation sequencing read simulator.

10 July 2018

1 reference

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Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum

10 July 2018

1 reference

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

10 July 2018

1 reference

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Inference of unexpected genetic relatedness among individuals in HapMap Phase III.

10 July 2018

1 reference

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Natural selection and the distribution of identity-by-descent in the human genome

10 July 2018

1 reference

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Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence

10 July 2018

1 reference

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10 July 2018

1 reference

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Adaptive copy number evolution in malaria parasites

10 July 2018

1 reference

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Comparative genomics of the neglected human malaria parasite Plasmodium vivax

10 July 2018

1 reference

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Genome-wide detection and characterization of positive selection in human populations

10 July 2018

1 reference

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Return of chloroquine antimalarial efficacy in Malawi.

10 July 2018

1 reference

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Principal components analysis corrects for stratification in genome-wide association studies

10 July 2018

1 reference

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A systematic map of genetic variation in Plasmodium falciparum

10 July 2018

1 reference

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A map of recent positive selection in the human genome

10 July 2018

1 reference

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Recombination hotspots and population structure in Plasmodium falciparum

10 July 2018

1 reference

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Spread of chloroquine resistance in Plasmodium falciparum

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5988311

Detecting recent positive selection in the human genome from haplotype structure

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5988311

Genetic diversity and chloroquine selective sweeps in Plasmodium falciparum

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5988311

Evolution of a unique Plasmodium falciparum chloroquine-resistance phenotype in association with pfcrt polymorphism in Papua New Guinea and South America

10 July 2018

1 reference

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Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences

10 July 2018

1 reference

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Multipoint quantitative-trait linkage analysis in general pedigrees

10 July 2018

1 reference

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hmmIBD: software to infer pairwise identity by descent between haploid genotypes.

10 July 2018

1 reference

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Mapping the malaria parasite druggable genome by using in vitro evolution and chemogenomics

13 August 2018

1 reference

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Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

13 August 2018

1 reference

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Estimating genotyping error rates from Mendelian errors in SNP array genotypes and their impact on inference.

13 August 2018

1 reference

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Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum

13 August 2018

1 reference

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Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum

13 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29791438

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1007279

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29791438%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29791438%20AND%20SRC:MED&resulttype=core&format=json

27 March 2020

PubMed publication ID

29791438

1 reference