Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida. (Q52882154)

9 May 2018

title

Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida. (English)

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9 May 2018

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1

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9 May 2018

publication date

1 April 1994

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9 May 2018

Journal of Molecular Evolution

published in

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9 May 2018

volume

38

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issue

4

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page(s)

328-335

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9 May 2018

cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily

cites work

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12 December 2020

Plasmid gene organization: naphthalene/salicylate oxidation

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12 December 2020

Purification and characterisation of the NADH:acceptor reductase component of xylene monooxygenase encoded by the TOL plasmid pWW0 of Pseudomonas putida mt-2

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12 December 2020

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

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12 December 2020

Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0

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12 December 2020

Nucleotide sequence analysis of the Pseudomonas putida PpG7 salicylate hydroxylase gene (nahG) and its 3'-flanking region

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12 December 2020

Purification, subunit structure, and partial amino acid sequence of metapyrocatechase

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12 December 2020

Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1

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12 December 2020

DNA sequence of the tryptophan synthase genes of Pseudomonas putida

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12 December 2020

Divergent evolution of chloroplast-type ferredoxins

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12 December 2020

Nucleotide sequences of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydrolase from Pseudomonas CF600.

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12 December 2020

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

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12 December 2020

Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600

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12 December 2020

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

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12 December 2020

Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida

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12 December 2020

Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products

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12 December 2020

Primary structure of xylene monooxygenase: similarities to and differences from the alkane hydroxylation system

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12 December 2020

Kinetic studies on benzyl alcohol dehydrogenase encoded by TOL plasmid pWWO. A member of the zinc-containing long chain alcohol dehydrogenase family.

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12 December 2020

Molecular analysis of regulatory and structural xyl genes of the TOL plasmid pWW53-4.

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12 December 2020

The meta cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes.

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12 December 2020

Complete nucleotide sequence of the metapyrocatechase gene on the TOI plasmid of Pseudomonas putida mt-2.

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12 December 2020

Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida

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12 December 2020

Classification: purposes, principles, progress, prospects.

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12 December 2020

DNA sequence determination of the TOL plasmid (pWW0) xylGFJ genes of Pseudomonas putida: implications for the evolution of aromatic catabolism

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12 December 2020

Prokaryotic signal transduction mediated by sensor and regulator protein pairs

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12 December 2020

Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons

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12 December 2020

Nucleotide sequence of the regulatory gene xylS on the Pseudomonas putida TOL plasmid and identification of the protein product

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12 December 2020

Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmid

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12 December 2020

An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid

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12 December 2020

Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases

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12 December 2020

The presence of two complete homologous meta pathway operons on TOL plasmid pWW53.

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12 December 2020

Codon preferences in free-living microorganisms

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12 December 2020

Evolutionary differences in chromosomal locations of four early genes of the tryptophan pathway in fluorescent pseudomonads: DNA sequences and characterization of Pseudomonas putida trpE and trpGDC

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12 December 2020

Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution

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12 December 2020

Nucleotide sequence and expression of gene nahH of plasmid NAH7 and homology with gene xylE of TOL pWWO.

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12 December 2020

Purification and characterisation of TOL plasmid-encoded benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase of Pseudomonas putida

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12 December 2020

Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases

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12 December 2020

Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for integration host factor protein.

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12 December 2020

The guanine and cytosine content of genomic DNA and bacterial evolution

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12 December 2020

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.

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12 December 2020

A method for measuring the non-random bias of a codon usage table

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12 December 2020

Protein phosphorylation and regulation of adaptive responses in bacteria

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12 December 2020

Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids

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12 December 2020

Codon catalog usage is a genome strategy modulated for gene expressivity

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12 December 2020

Toluene transposons Tn4651 and Tn4653 are class II transposons

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12 December 2020

The TOL plasmids: determinants of the catabolism of toluene and the xylenes.

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12 December 2020

Nucleotide sequence and expression of the catechol 2,3-dioxygenase-encoding gene of phenol-catabolizing Pseudomonas CF600.

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12 December 2020

Identifiers

DOI

10.1007/BF00163150

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9 May 2018

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9 May 2018