JAMI: a Java library for molecular interactions and data interoperability. (Q52324654)

http://europepmc.org/abstract/PMC/5896107

13 June 2018

title

JAMI: a Java library for molecular interactions and data interoperability. (English)

1 reference

http://europepmc.org/abstract/PMC/5896107

13 June 2018

main subject

interoperability

0 references

molecular interaction

1 reference

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Sandra Orchard

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Maximilian Koch

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Anjali Shrivastava

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Diego Alonso-López

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Javier De Las Rivas

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Juri Rappsilber

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Yo Yehudi

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

M Sivade Dumousseau

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

N Del-Toro

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

C W Combe

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

J Heimbach

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

J Sullivan

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

language of work or name

English

0 references

publication date

11 April 2018

1 reference

http://europepmc.org/abstract/PMC/5896107

13 June 2018

published in

BMC Bioinformatics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

133

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

10 June 2020

copyright license

start time

11 April 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

ComplexViewer: visualization of curated macromolecular complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

The BioGRID interaction database: 2017 update

14 June 2018

1 reference

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14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

Expansion of the Gene Ontology knowledgebase and resources

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

ChEBI in 2016: Improved services and an expanding collection of metabolites

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

The complex portal--an encyclopaedia of macromolecular complexes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

Controlled vocabularies and ontologies in proteomics: overview, principles and practice

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

The PSI semantic validator: a framework to check MIAPE compliance of proteomics data

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

The Database of Interacting Proteins: 2004 update

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

BIND: the Biomolecular Interaction Network Database

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

The minimum information required for reporting a molecular interaction experiment (MIMIx).

16 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5896107

10.1186/S12859-018-2119-0

16 June 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/DumousseauKSARd18

10 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1103218459

0 references

Fatcat ID

release_oocgaynr25e2zjt4vtritibrse

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/oocgaynr25e2zjt4vtritibrse

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29642846%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

PubMed publication ID

29642846

1 reference